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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG025464.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 340aa MW: 38738.5 Da PI: 4.7052 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.2 | 4.5e-55 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf s+rdkky++g+r+nratk+gyWkatgkd++v s + CCG025464.1 6 LPPGFRFHPTDEELVIYYLDRKINGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDLEWYFLSPRDKKYPNGSRTNRATKAGYWKATGKDRPVNS-Q 101 79****************************.99**************96434555777**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ vg+kktLv+y+grap+g +t+Wvmheyrl CCG025464.1 102 KRPVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 99****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-63 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.801 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-28 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV IYYLDRKING RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60 DLEWYFLSPR DKKYPNGSRT NRATKAGYWK ATGKDRPVNS QKRPVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLIDSLCGA APSSLKDSYA LCRVFKKTIH IPKKKEEKNN GNEEKDAAWV 180 SEEQLLGDDT TGIESSKGRE AEDENFNNDY CKFPCETSSS DVTQGTPIET AIADDLQAPF 240 PSDEANSSAS LYSMGVDFSS NLIQDMQMHN CSSLHYQFPF PPLELEDFPQ ISIPESMKPS 300 KPEIIDDYMM YKDCMNGTLE EIFSLCSSQD NSNTVLPMQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-57 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-57 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-57 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-57 | 1 | 157 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-57 | 1 | 157 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-57 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-57 | 1 | 157 | 12 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00205 | DAP | Transfer from AT1G54330 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC187861 | 0.0 | AC187861.2 Populus trichocarpa clone Pop1-1A4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011014226.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | A0A2K1YVR4 | 0.0 | A0A2K1YVR4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s18180.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10508 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 1e-97 | NAC domain containing protein 20 |