PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG025463.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 350aa MW: 39102.4 Da PI: 8.7104 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 13 | 73 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.............TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.............kgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+++++ g ++R++k+c++rw++yl CCG025463.1 13 RGLWSPEEDEKLIKYIAAHGHGSWSSVPKFAGlkrcgksfpkfagLKRCGKSCRLRWLNYL 73 788********************************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.8 | 1.6e-15 | 79 | 121 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg +++ E++ ++da++ lG++ W+ I+++++ gRt++++k++w+ CCG025463.1 79 RGCFSAVEEQVIIDAHRILGNR-WSQISKHLP-GRTDNEVKNFWN 121 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 5 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.722 | 8 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-26 | 10 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 12 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.9E-15 | 13 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-10 | 16 | 73 | No hit | No description |
PROSITE profile | PS51294 | 23.141 | 74 | 128 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-23 | 77 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-14 | 78 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-13 | 79 | 122 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.92E-11 | 82 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MGHRCCSKPK VKRGLWSPEE DEKLIKYIAA HGHGSWSSVP KFAGLKRCGK SFPKFAGLKR 60 CGKSCRLRWL NYLRPELKRG CFSAVEEQVI IDAHRILGNR WSQISKHLPG RTDNEVKNFW 120 NSSIKKKLMA QGLDPKTHNL IPSHQRAANK VACNTSPSNH QPFSIISRDS KMKDVSMKIN 180 PPILTLASPY PTNGSTRPSL LQTTTGLPLP TSCYDNPSVI WNVNTQNSYD SSLFPCVSSI 240 ENSLVSPSSS TSVNPTGFGL LDEDCFWSCS NIVEPFEAAK LFESMRPQDQ ENQLNKICDT 300 QIVDKNKGVH VNMDASFGTS SYDLELVDST LFPGSMCRDL SSMDDFSWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-29 | 9 | 128 | 3 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182660 | 0.0 | AC182660.2 Populus trichocarpa clone Pop1-125N19, complete sequence. | |||
GenBank | AC187861 | 0.0 | AC187861.2 Populus trichocarpa clone Pop1-1A4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011014238.1 | 0.0 | PREDICTED: myb-related protein 330-like | ||||
TrEMBL | B9HYC1 | 0.0 | B9HYC1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s18170.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3466 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 1e-76 | myb domain protein 67 |