PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025416.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 1444aa    MW: 159228 Da    PI: 8.6982
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025416.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.12e-281768152
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52
                 kprl+Wt+eLH+rFveav+qLGG+++AtPk+++++m+++gLtl+h+kSHLQ 
  CCG025416.1 17 KPRLKWTQELHQRFVEAVDQLGGADRATPKSLMRVMEIPGLTLYHLKSHLQA 68
                 79*************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-251568IPR009057Homeodomain-like
SuperFamilySSF466896.09E-131670IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-191768IPR006447Myb domain, plants
PfamPF143798.3E-22139186IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
SuperFamilySSF519054.66E-47385670IPR023753FAD/NAD(P)-binding domain
Gene3DG3DSA:3.50.50.602.4E-81390512IPR023753FAD/NAD(P)-binding domain
PfamPF007322.2E-10395498IPR000172Glucose-methanol-choline oxidoreductase, N-terminal
Gene3DG3DSA:3.50.50.602.4E-81558684IPR023753FAD/NAD(P)-binding domain
PfamPF007324.7E-14569677IPR000172Glucose-methanol-choline oxidoreductase, N-terminal
PROSITE patternPS006240636650IPR000172Glucose-methanol-choline oxidoreductase, N-terminal
SuperFamilySSF543734.58E-19716816No hitNo description
PfamPF051991.8E-29731859IPR007867Glucose-methanol-choline oxidoreductase, C-terminal
Gene3DG3DSA:3.50.50.602.4E-81741755IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF519054.66E-47810859IPR023753FAD/NAD(P)-binding domain
Gene3DG3DSA:3.50.50.602.4E-81811859IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF519051.94E-459441231IPR023753FAD/NAD(P)-binding domain
Gene3DG3DSA:3.50.50.603.5E-839461073IPR023753FAD/NAD(P)-binding domain
PfamPF007325.2E-269561238IPR000172Glucose-methanol-choline oxidoreductase, N-terminal
Gene3DG3DSA:3.50.50.603.5E-8311191245IPR023753FAD/NAD(P)-binding domain
PROSITE patternPS00624011971211IPR000172Glucose-methanol-choline oxidoreductase, N-terminal
SuperFamilySSF543731.57E-2012801378No hitNo description
PfamPF051991.1E-2712931421IPR007867Glucose-methanol-choline oxidoreductase, C-terminal
Gene3DG3DSA:3.50.50.603.5E-8313031317IPR023753FAD/NAD(P)-binding domain
Gene3DG3DSA:3.50.50.603.5E-8313731435IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF519051.94E-4513771431IPR023753FAD/NAD(P)-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016614Molecular Functionoxidoreductase activity, acting on CH-OH group of donors
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 1444 aa     Download sequence    Send to blast
MGLRHQNMNL VLSTDGKPRL KWTQELHQRF VEAVDQLGGA DRATPKSLMR VMEIPGLTLY  60
HLKSHLQAIL FRMIRSIYKY RLGKSQQSLI SSENNQEVLF VADAKEIQGS DDHFQESAFI  120
QSSGGICSDG NQHPINGSFQ IAQALQMQME VKRKLHEQIE VQRHLQLRIE AQGKYLQSVL  180
KKAQETLAGY NSYSMGVELA KSELSRLVSM ANSGCPSSSI SDLTETGGSS LRDMERTQMR  240
SAVCSMESSL TSSESSGRKE DMQQKNEIHD TDKSNTASVE LPLMDIHPQD NPLNTCSSNQ  300
GKKRSGSIIS DGVSVEQPLA SRLKNGDRLS LGIKPWGMET GRTRMELTHI IYRYVLVTAF  360
LFLVLVKLSH SFPSTQGKNL PYLTSDVEEV SGKYFDYIVV GGGTAGCPLA ATLSERFSVL  420
VIERGGSPYG NPLVSDKMYY GFPLIQPDEF SSVAQSFVSK DGIENHRGRV LGGSSAINGG  480
FYSRASDDFV KTVGWDEELV KEAYEWVESN IVFKPELTIW QSVVELGLLE AGILPYNGFS  540
MEHIEGTKIG GTLFDEYGIR HTPADLLETG NPKNIIVLLN ATVKNIVFHV NGKGNESMVH  600
GVRFIKSDGS TSQTYEAYLN QPENSSSWGD VILSAGALGS PQILLLSGIG PEKHLRKFGI  660
PLVLNLKGVG KEMKDNPGIA LLADTKPTYR FPDAPQVAGI TKDMKFIVEG GIVPISFNAT  720
RMPIAIKLAF PESKGTLELK STDPRQNPAV EFHYLEKEKD LEECTKMVQL LNKIARSRSV  780
VLFLGKEPQN NLMSSQDELR NFCKKNVRTY YHYHGGSTVG SVVDDDYKVH GIKGLRVIDG  840
STFLESPGTN PMATVLMLGS PPPLPTPCDR LVSQFQDEAI NGWRRLASPA TSTKLIEKAS  900
KLESAEMELL SIIHGHGLVA AFIFLLINLF PSSSLPQGNR LPYMTSNVKE VLGKSFDYII  960
VGGGTAGCPL AATLSEKFSV LLIERGGSPY ENPMLLDKKY FGFPFLQTDE FSSVAQRFIS  1020
RDGVPNLRGR ILGGTSTINA GFYSRASADF IKRVGWDEKL VKEAYEWVES KVVFKPLLTK  1080
WNSAVKSGLL EAGILPYNGF SWDHIAGTKI GGTVFDANRK RHISADLLER GNSSNIVVLL  1140
NATVKNIVFR RDDKGKKSIV RGIRFIKSNG SINQTYESYL TQPENSSPQG DVILSAGAIG  1200
SPQILLLSGI GPKEHLGNFS IPLFLDLKGV GQDMQDNPGI ILIPRAKPEY RLPESPQVVG  1260
IAKDFKFVVE GFVLPVSFNA TTLMRISIKL AFPESKGKLE LNSTDPRQNP VVLFNYLAEE  1320
KDLRECVQMV QLVKKVARSR SIARFLGAKP LINVTSNPNE LRNFCRKNVR TYYHFHGGCS  1380
IGSVIDNDYK VIGVKGLRVI DGSTLSESPG TNPMATLLML GRYQGIKILR EREDASAFGN  1440
QQHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3red_A1e-111389143522521Hydroxynitrile lyase
3red_B1e-111389143522521Hydroxynitrile lyase
3red_C1e-111389143522521Hydroxynitrile lyase
3red_D1e-111389143522521Hydroxynitrile lyase
3red_E1e-111389143522521Hydroxynitrile lyase
3red_F1e-111389143522521Hydroxynitrile lyase
3red_G1e-111389143522521Hydroxynitrile lyase
3red_H1e-111389143522521Hydroxynitrile lyase
3red_I1e-111389143522521Hydroxynitrile lyase
3red_J1e-111389143522521Hydroxynitrile lyase
3red_K1e-111389143522521Hydroxynitrile lyase
3red_L1e-111389143522521Hydroxynitrile lyase
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2306111e-116CU230611.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011013275.10.0PREDICTED: (R)-mandelonitrile lyase-like
RefseqXP_011013283.10.0PREDICTED: (R)-mandelonitrile lyase-like
TrEMBLA0A1R3JEG80.0A0A1R3JEG8_COCAP; Uncharacterized protein
STRINGPOPTR_0010s17530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.14e-77G2-like family protein