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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG025406.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 282aa MW: 32283.4 Da PI: 8.4181 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.3 | 2.9e-53 | 10 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL+++++++++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfF++ d+ky++g r+nrat sgyWkatg+dk+++s +++ CCG025406.1 10 LPPGFRFHPTDEELIMYYLRNQATSRPCPA-SIIPEVDIYKFDPWQLPEKADFGENEWYFFTPLDRKYPNGVRPNRATVSGYWKATGTDKAIHS-GSK 105 79****************************.89***************99999*****************************************.99* PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfykgr pkg+ktdW+m+eyrl CCG025406.1 106 YVGVKKALVFYKGRPPKGTKTDWIMQEYRL 135 ****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.19E-62 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.504 | 10 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-26 | 11 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MQGKTNSEQL PPGFRFHPTD EELIMYYLRN QATSRPCPAS IIPEVDIYKF DPWQLPEKAD 60 FGENEWYFFT PLDRKYPNGV RPNRATVSGY WKATGTDKAI HSGSKYVGVK KALVFYKGRP 120 PKGTKTDWIM QEYRLNDSNK PASKQNGSMR LVLCRIYRKR HAIRHLEEKT ENPVHARLDV 180 TPDNDAREQQ MMKISRTCSL SHLLEMEYLG SISQLLSGDT YNSDFDSQNL MSDALTDHVI 240 KIQLGEMSPE HTDNGNFQGN QRGGTSLINQ PLIGNPVMYG FQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-63 | 10 | 162 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-63 | 10 | 162 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-63 | 10 | 162 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-63 | 10 | 162 | 17 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-63 | 10 | 162 | 17 | 168 | NAC domain-containing protein 19 |
4dul_B | 4e-63 | 10 | 162 | 17 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182709 | 0.0 | AC182709.2 Populus trichocarpa clone Pop1-85D11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011013028.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Swissprot | K4BNG7 | 1e-114 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | B9HXY0 | 0.0 | B9HXY0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s17350.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4103 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 1e-108 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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