PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG025391.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 28210.3 Da PI: 4.5505 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.7 | 4.4e-16 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+ Vr+++ +grWvAeI+d + r++lg+++ta eAa+a+++a+ l+g CCG025391.1 42 RYPRVRQRP-SGRWVAEIKDtI-----QeIRVWLGTYDTAGEAARAYDEAACLLRG 91 6889*****.7*********33.....36**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.08E-23 | 41 | 93 | No hit | No description |
SMART | SM00380 | 1.1E-21 | 42 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.7E-22 | 42 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.201 | 42 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-14 | 43 | 97 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.3E-6 | 43 | 54 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-10 | 46 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MARERKASEG EEEKVSNDGN MAWDQKIEEA GSLHGVRRAR KRYPRVRQRP SGRWVAEIKD 60 TIQEIRVWLG TYDTAGEAAR AYDEAACLLR GANIYSNENF WPCSPSSRSK PALPLKIVNL 120 LLRLKARNNA LIPTTAFPVN QEEQKAREVE ENQFDHFFEM PGQDHRKTGA FEVDDNWSDI 180 DGNGQSEQQE GRGEEEIDMR LIDFQLDDAL GSSCYHPPFD IAQEMMEPME QEHNGDEPPM 240 LGEIMKA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011012725.1 | 1e-116 | PREDICTED: ethylene-responsive transcription factor CRF2-like | ||||
TrEMBL | B9HIA9 | 1e-110 | B9HIA9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s09080.1 | 1e-95 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-12 | related to AP2 11 |