PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025327.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family YABBY
Protein Properties Length: 184aa    MW: 20533.4 Da    PI: 9.2959
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025327.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY165.15.1e-51131715163
        YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnla..kasqllaaeshldeslkee.lleelkveeenlksnvekeesastsvsse 99 
                   ss+++ yv+CnfCnt+lav +P + ++ +vtv+CGhC +l  ++ +  +  + l   +hl+ + + + +  ++k   ++++   +  ++ + s s  
  CCG025327.1  13 LSSDHLSYVRCNFCNTVLAVRIPCKRMLDTVTVKCGHCNNLSFLSTRppNLGNFLDIDHHLSVQCTAKgVSSNEKLLFKETQGFSTDFRKGEYSSS-- 108
                  589************************************985544330044466666666666555443444444444444444433333333333.. PP

        YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                    s++++  vp+vp v++PPek+ r Ps+ynrf+keeiqrika+nP+i hreafs+aaknWa +
  CCG025327.1 109 -SSTSSEPLVPKVPFVVKPPEKKHRLPSTYNRFMKEEIQRIKAANPEIPHREAFSTAAKNWARY 171
                  .37788899*****************************************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.9E-5314171IPR006780YABBY protein
SuperFamilySSF470951.44E-7119170IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.7E-4125170IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MNLEEKVIDT DVLSSDHLSY VRCNFCNTVL AVRIPCKRML DTVTVKCGHC NNLSFLSTRP  60
PNLGNFLDID HHLSVQCTAK GVSSNEKLLF KETQGFSTDF RKGEYSSSSS TSSEPLVPKV  120
PFVVKPPEKK HRLPSTYNRF MKEEIQRIKA ANPEIPHREA FSTAAKNWAR YLPNTGAGSG  180
GSKN
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091035e-62AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011686.11e-125PREDICTED: protein CRABS CLAW-like
SwissprotQ76EJ03e-59YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A3N7GFN91e-121A0A3N7GFN9_POPTR; Uncharacterized protein
STRINGPOPTR_0010s16410.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.16e-50YABBY family protein