PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG025326.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 513aa MW: 56397.6 Da PI: 8.2582 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.5 | 2.8e-41 | 166 | 241 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv +C++dls+ k+yh+rhkvCevh+k+p v+v+g eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q CCG025326.1 166 CQVYDCNKDLSSSKDYHKRHKVCEVHTKTPRVIVNGNEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQ 241 **************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 31.855 | 163 | 240 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 9.5E-32 | 164 | 227 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.81E-39 | 165 | 245 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.6E-31 | 166 | 239 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MDFWSYASEG KGLLFSDEID LSADAFTRSR KASIGCDTEA LESAESLDLG FSEIPRKPFH 60 GSKTGAGMFV GSCVGIDSSK LVVGSANCMI ASNSSMESRS NHSNSLMESN SQDSSLFDLK 120 LGRLADCKDA QNSRFSKERL LLSSASPTAQ AKRAPVASLR PRISFCQVYD CNKDLSSSKD 180 YHKRHKVCEV HTKTPRVIVN GNEQRFCQQC SRFHLLVEFD DGKRSCRKRL AGHNERRRKP 240 QFGTLSVKPH KLLHPYQSTK FLGTSLPKRT SFLFPNMLPG GTFCPQSYEE DNWRKHVKLQ 300 ENSIYSSPSA IPIRSGQLVP KSFLHLHGNR IQKTCGISPL DIEDLTISNT ATAIHELAGL 360 SHSSCALSLL SAAESQDLSH SAGNIMVRPL ASQAGGACQT LGIANKSLGI GFSEKYVPIG 420 INSFGMNFIE VDNMGPFGVS GSGHAADLKV ETDGFLHQSD FLNAKHCVSP ENESTVDWLQ 480 LSSHLQRVEQ QRNSMKVKHE NEDFCSFGAT YRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 163 | 239 | 8 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209103 | 0.0 | AC209103.1 Populus trichocarpa clone POP056-L16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011011660.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_011011667.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_011011676.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A2K1YUI3 | 0.0 | A0A2K1YUI3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s16400.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-46 | SBP family protein |