PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG025128.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 358aa MW: 39920.9 Da PI: 6.3228 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.8 | 2.2e-14 | 165 | 211 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L CCG025128.1 165 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 211 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.907 | 162 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-12 | 165 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-14 | 166 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.0E-15 | 166 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-13 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.47E-5 | 175 | 214 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 2.4E-5 | 247 | 297 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MCGLKEEDQG ECSHTIHNLQ NYQEQLLLQY HQQMQQHQQQ QSSDIYGGAR GSGFIFPEVS 60 PILPWPLPPV HSFNPAHFTP NHPVRDQDPF LIPPPVPSSY GGLFNRRAPS LQFAYDGTPS 120 DHLRIISDTL GPVVQPGSAP FGLQAELSKM TAQEIMDAKA LAASKSHSEA ERRRRERINN 180 HLAKLRSLLP STTKTDKASL LAEVIQHVKE LKRQTTLIAE TSPVPTEMDE LTVDTADEDG 240 KFVIKASLCC EDRPDLLPDL IKTLKALRLR TLKAEITTLG GRVKNVLFIS GEEDSSSDSN 300 DQHQQQEPLQ YSISSIQEAL KAVMEKTGGD ESSSGSVKRQ RTNINLLEQQ QQQQHRSL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 175 | ERRRRE |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149481 | 0.0 | AC149481.1 Populus trichocarpa clone Pop1-16J18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011008616.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
Refseq | XP_011008622.1 | 0.0 | PREDICTED: transcription factor bHLH30 | ||||
Swissprot | Q9S7Y1 | 1e-112 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | B9HWM2 | 0.0 | B9HWM2_POPTR; BHLH family protein | ||||
STRING | POPTR_0010s14010.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4589 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 5e-89 | bHLH family protein |
Publications ? help Back to Top | |||
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