PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG025120.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 391aa MW: 42864 Da PI: 7.3346

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG025120.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	88.9	4.6e-28	218	281	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGse........kAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ CCG025120.2 218 KQRRCWSPELHRRFLHALQQLGGSHgvsiqcnvAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 281 79*******************985555555569*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.955	215	283	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-27	215	284	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.58E-15	216	284	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-23	218	281	IPR006447	Myb domain, plants
Pfam	PF00249	9.0E-7	220	279	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MQRCHEYVEA LEEERRKIQV FERELPLCLE LVTQAIEACK RELSGTTEDH NMHGQSECSE 60 QTSSEGPVLE EFIPIKRTHS SDDDENDNNH DDDDHQEQQS QNKNKRNKSN SSISNNDHKK 120 KSDWLRSVQL WNQSPDPPQK QDLPRKAAVT EVKRNGAGGA FQPFHRENSV GKSSHQAISK 180 ASPSVPASAT SSIAGAVTGG TGGGGNKKED KEEGNQRKQR RCWSPELHRR FLHALQQLGG 240 SHGVSIQCNV AATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPSPTVH NNSSPQAPQF 300 VVVGGIWVPP TEYAAVAATT TAGETSTISA ANGIYAPIAA PPPAVPQNRQ LTQSEHLQSE 360 GRGSHGERGT HSNNSPATSS STHTTTTSPV F

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MQRCHEYVEA LEEERRKIQV FERELPLCLE LVTQAIEACK RELSGTTEDH NMHGQSECSE  60
QTSSEGPVLE EFIPIKRTHS SDDDENDNNH DDDDHQEQQS QNKNKRNKSN SSISNNDHKK  120
KSDWLRSVQL WNQSPDPPQK QDLPRKAAVT EVKRNGAGGA FQPFHRENSV GKSSHQAISK  180
ASPSVPASAT SSIAGAVTGG TGGGGNKKED KEEGNQRKQR RCWSPELHRR FLHALQQLGG  240
SHGVSIQCNV AATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRPSPTVH NNSSPQAPQF  300
VVVGGIWVPP TEYAAVAATT TAGETSTISA ANGIYAPIAA PPPAVPQNRQ LTQSEHLQSE  360
GRGSHGERGT HSNNSPATSS STHTTTTSPV F

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011008471.1	0.0	PREDICTED: transcription factor LUX-like isoform X1
Swissprot	Q9FPE8	1e-106	HHO3_ARATH; Transcription factor HHO3
TrEMBL	B9HWL5	0.0	B9HWL5_POPTR; Uncharacterized protein
STRING	POPTR_0010s13900.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3918	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	8e-88	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]