PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG025087.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 241aa MW: 26605.2 Da PI: 7.3401 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.2 | 7.2e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+++p++ ++q++++ +++k++G++ +++l++a+p+ r++++ssl+yeA+ r+ +PvyG+vg+++++++ +q++++ CCG025087.1 2 SCNGCRVLRKGCNDNCTIRPCLqwiksTDSQANATLFLAKFYGRAGLINLIEAAPQRLRPAIFSSLLYEACGRIVNPVYGSVGMLWSGNWAQCQAAVD 99 6*********************9998777889***************************************************************999 PP DUF260 94 lall 97 ++l CCG025087.1 100 AVLK 103 8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.171 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.6E-24 | 2 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSCNGCRVLR KGCNDNCTIR PCLQWIKSTD SQANATLFLA KFYGRAGLIN LIEAAPQRLR 60 PAIFSSLLYE ACGRIVNPVY GSVGMLWSGN WAQCQAAVDA VLKGLPIISI PSSDVPAPHL 120 ISSLNTYDIR HVSRDQNSPE LNKVKSRTRY KRFTGTRPNS LAEPTGRLHQ GEMGWEPVRG 180 PWLGHLGNGD SRIKDEDSIF AAETVEDSLW SRVEPDQVFK FNGQGDDSDL SLELTLALVS 240 E |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011007889.1 | 1e-180 | PREDICTED: LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 4e-74 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | B9HWH6 | 1e-167 | B9HWH6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s13480.1 | 1e-167 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-76 | LOB domain-containing protein 42 |