PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 898aa MW: 100644 Da PI: 6.6732

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG025002.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.3	8.1e-16	62	134	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY++YA+ +GFs+ +++ ++ k++g + r+fvC +eg ++++ + C+a+l++++++ gkw+vt++++ HnH+ CCG025002.1 62 FYDDYARCLGFSTNVAHFTRPKTDGAMAAREFVCGREGLKRRSAYS--------------CHAMLRIELKSPGKWVVTHFVKAHNHS 134 9************************************9987665..............************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.9E-13	62	134	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.9E-26	297	389	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.905	575	611	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.7E-10	582	609	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-8	586	613	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MDVHVIDGEE GMGHRGVAYD GDSEPNDSGE ANNGEHDEDG AAELHEPCVG MEFDSENAAK 60 TFYDDYARCL GFSTNVAHFT RPKTDGAMAA REFVCGREGL KRRSAYSCHA MLRIELKSPG 120 KWVVTHFVKA HNHSTTSLRK VKYLRPRRHF AGAAKSVAET GHGVGVSPSG AGQPAAVVTS 180 GVGQGVGVVP SGVMYLSMDG NHAPVAETNH GVRNTPPAEP NRVIKTSTTV NYIVRPNNQK 240 RTLGRDAQNL LEYFKKMQAE NPGFFYAIQL DDENRMANVF WADARSRSAY THFGDAVTFD 300 TNSRVNQYRV PFAPFTGLNH HGQTILFGCA ILLDDSEASF VWLFKTFLTA MYDQQPASII 360 TNRDRAIQTA VSQVFPDARH CYCKWHVLRE GQEKLAHVCN AHPNFQLELY NCINLTETIE 420 EFESSWRDIL DKYDLRGHDW LQSLYDARAQ WVPVYFRDSF FAVMCPNQGF DGTFFDGYVN 480 QQTTLPMFFR QYERALDNWF ERELEADFDT ICTTPVLRTP SPMEKQAANL YTRKIFAKFQ 540 EELVETFVYT ANRMGGDPAI STFRVAKFED DQRAYIVSLN CPEMRANCSC QMFEYSGILC 600 RHVLTVFTVT NVLTLPPHYI LKRWTRNAKI STGMDDHGGD LPGQESLTLR YNNLCREAIK 660 YAEEGAIAAE TYNVAMVALR EGGKRVAVVK KNVAKVSPPG TGNDDRKTST SASDTTPLLW 720 PPQDEVTQRF NLNDTSTPVQ SVADLNLPRM APVSLQRDDG PPGNMAVLPC LKSMTWVMEN 780 RSSTTGNRVA VINLKLQDYG KTPSTELEVK FQLSRVTLEP MLRSMAYISE QLSTPANRVA 840 VINLKLQDTE TTTGESEVKF QVSRDTLGAM LRSMAYIREQ LSNSAEPQAE PPSKKHRK

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MDVHVIDGEE GMGHRGVAYD GDSEPNDSGE ANNGEHDEDG AAELHEPCVG MEFDSENAAK  60
TFYDDYARCL GFSTNVAHFT RPKTDGAMAA REFVCGREGL KRRSAYSCHA MLRIELKSPG  120
KWVVTHFVKA HNHSTTSLRK VKYLRPRRHF AGAAKSVAET GHGVGVSPSG AGQPAAVVTS  180
GVGQGVGVVP SGVMYLSMDG NHAPVAETNH GVRNTPPAEP NRVIKTSTTV NYIVRPNNQK  240
RTLGRDAQNL LEYFKKMQAE NPGFFYAIQL DDENRMANVF WADARSRSAY THFGDAVTFD  300
TNSRVNQYRV PFAPFTGLNH HGQTILFGCA ILLDDSEASF VWLFKTFLTA MYDQQPASII  360
TNRDRAIQTA VSQVFPDARH CYCKWHVLRE GQEKLAHVCN AHPNFQLELY NCINLTETIE  420
EFESSWRDIL DKYDLRGHDW LQSLYDARAQ WVPVYFRDSF FAVMCPNQGF DGTFFDGYVN  480
QQTTLPMFFR QYERALDNWF ERELEADFDT ICTTPVLRTP SPMEKQAANL YTRKIFAKFQ  540
EELVETFVYT ANRMGGDPAI STFRVAKFED DQRAYIVSLN CPEMRANCSC QMFEYSGILC  600
RHVLTVFTVT NVLTLPPHYI LKRWTRNAKI STGMDDHGGD LPGQESLTLR YNNLCREAIK  660
YAEEGAIAAE TYNVAMVALR EGGKRVAVVK KNVAKVSPPG TGNDDRKTST SASDTTPLLW  720
PPQDEVTQRF NLNDTSTPVQ SVADLNLPRM APVSLQRDDG PPGNMAVLPC LKSMTWVMEN  780
RSSTTGNRVA VINLKLQDYG KTPSTELEVK FQLSRVTLEP MLRSMAYISE QLSTPANRVA  840
VINLKLQDTE TTTGESEVKF QVSRDTLGAM LRSMAYIREQ LSNSAEPQAE PPSKKHRK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006373.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X2
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A3N7EYI6	0.0	A0A3N7EYI6_POPTR; Uncharacterized protein
STRING	POPTR_0004s20710.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]