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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
CCG024892.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
C3H |
Protein Properties |
Length: 452aa MW: 48920.6 Da PI: 8.1689 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
CCG024892.1 | genome | LZU | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 35.1 | 2.2e-11 | 50 | 75 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
++ + C +f+rtG+C yG++C+++H+
CCG024892.1 50 PGVPDCGYFLRTGFCGYGSNCRYNHP 75
5789*********************8 PP
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2 | zf-CCCH | 33.8 | 5.5e-11 | 94 | 118 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C ++ +tGtCkyG++Ck++H++
CCG024892.1 94 QPDCGYYIKTGTCKYGSTCKYHHPR 118
789********************96 PP
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3 | zf-CCCH | 30.1 | 8.1e-10 | 140 | 163 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
+ C+++ rt Ck+G CkF+H++
CCG024892.1 140 KSCPYYTRTRSCKFGVACKFHHPQ 163
56********************97 PP
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4 | zf-CCCH | 34.6 | 3.1e-11 | 289 | 314 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
++++Cr+f+ +GtCkyG+ Ck++H++
CCG024892.1 289 DQPECRHFMSSGTCKYGSDCKYHHPK 314
689*********************96 PP
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5 | zf-CCCH | 32 | 2.1e-10 | 335 | 359 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++ C++++ +G+Ck+G++C++ H+
CCG024892.1 335 GQAVCPDYSMYGICKFGPTCRYDHP 359
7899********************9 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50103 | 13.751 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-6 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-9 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 54 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-4 | 55 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.976 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-4 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-8 | 94 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 96 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.2E-4 | 97 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 135 | 164 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.681 | 136 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.11 | 138 | 163 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-7 | 139 | 163 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.399 | 287 | 315 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-5 | 287 | 314 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-9 | 289 | 314 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 290 | 316 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 293 | 314 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 332 | 359 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.037 | 333 | 361 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-7 | 333 | 360 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-7 | 335 | 359 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 452 aa
Download sequence Send
to blast |
MPDHNNRQVK SNAVSNQSAD NIEEAFWRLK IHDPQEQGGM AQSSPYPDRP GVPDCGYFLR 60 TGFCGYGSNC RYNHPIYAAQ GTQLREELPE RIGQPDCGYY IKTGTCKYGS TCKYHHPRDR 120 NGAGPVSFNV LGLPMRQDEK SCPYYTRTRS CKFGVACKFH HPQPASLGTS LPLTGAAAFG 180 STGSPIVPSS GLPYVGGLPT WSLPRAPPYM SGTHLQGPQA YMPVVVSPPQ GIVPVPGWNT 240 YVGNSNPMSS SSILGSSRAY DSRNHGDSGS SGQAHLLSAA IPALPERPDQ PECRHFMSSG 300 TCKYGSDCKY HHPKERIAQL ATSTMGPFGL PLRPGQAVCP DYSMYGICKF GPTCRYDHPL 360 PTYPYSYSLS LPSLSMRDSS LVTYPRMAQA ALSSATPVSL SKLPDLIRNP DGASYNKHQN 420 SDSNTKTLDD PTEHAGSPPP HSSQASSEPS HD
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Functional Description ? help
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Source |
Description |
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |