PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024868.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 439aa    MW: 48083.5 Da    PI: 4.7929
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024868.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.95.3e-06224274756
                  --HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   7 ftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++k+q ++L+e F+  n+    + r  LA +l+L+   V  WF  +R + k
  CCG024868.1 224 LSKKQSHTLQEIFKIhNPCTPSTLRLALAGQLKLDPVIVDDWFRMKRERTK 274
                  6899**********878888888999*********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.268215276IPR001356Homeobox domain
CDDcd000860.00277219277No hitNo description
Gene3DG3DSA:1.10.10.602.9E-5219282IPR009057Homeodomain-like
SuperFamilySSF466895.13E-6220276IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAETLDLNSG PDLSTSPTDP SQPSVVNFWY QILKSNQEYL QHTLRPSTSR LDSEWGHVFD  60
KSSKKKRQRM DTNSGAGSGV NSASDLSEAL SAVSAALSLS SSASSGVRDQ WEKEGAEFIR  120
KGVEELQDEM VDNSNENPIS FDIQSLSSES SEDDVPLSDS NENNSSSNGL GKQPGIGLFS  180
PSLQVESGIA TNDDGHRGIR DSEVDTAKTS DYEENQLIRR KLGLSKKQSH TLQEIFKIHN  240
PCTPSTLRLA LAGQLKLDPV IVDDWFRMKR ERTKLKQTEA IDAERASSRA RNDEENGLTR  300
KKLRLSKEQS AFLEESFKEH NTLHPSLALN EVSLSYNHAE AKASFSKAAE SSSSPSGSVV  360
SESKGKVPFF DSIKFDMNRL SMDDADEGAA ISSPNSAASS FQMDFGIRSG RGRKRDLEAI  420
DAERASSRAS DDEENGWTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368KKKRQR
2298304TRKKLRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016614.11e-103PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
RefseqXP_011016615.11e-103PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X2
RefseqXP_011039463.11e-103PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
RefseqXP_011039464.11e-103PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X2
RefseqXP_011039466.11e-103PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X4
TrEMBLA0A3N7HX537e-74A0A3N7HX53_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05900.19e-85(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-12homeobox from Arabidopsis thaliana