PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024834.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 513aa    MW: 58330.7 Da    PI: 6.6617
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024834.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.79.7e-27273326155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k +++WtpeLH++Fv+ave+L G ++A+P+++lelm+v++Lt+++v+SHLQkYR+
  CCG024834.1 273 KMKVDWTPELHKKFVQAVEKL-GVDQAIPSRVLELMQVESLTRHNVASHLQKYRM 326
                  5689*****************.********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.0E-556129No hitNo description
PROSITE profilePS5129414.532270329IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-25271327IPR009057Homeodomain-like
SuperFamilySSF466895.97E-18272329IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-24273327IPR006447Myb domain, plants
PfamPF002492.3E-8276325IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MVTGEYEQQQ WEFQVSRNCK GLAYHYDFKH SLPEHHDEVH SGKNCTCQCY VIVYQVAHTE  60
MLDATDFFQV LMLGAVEFLR KPLSEDKLRN IWQHVVHKAF NAGGSVQSKS LKPVKDSIVS  120
MLELKVELEE NKDENMEKTE NVSLAHESNE QQSPARDKHP APSTWQFKQV GWLLDDGDCQ  180
DHINFSVEKD SVEQEGESKS FETTCTMSQE TLQAGHPPCF IETVIKETGG LTDGAKSENN  240
IHPNPQNKDS LNHSNDVASD LHTSDGTRAN RKKMKVDWTP ELHKKFVQAV EKLGVDQAIP  300
SRVLELMQVE SLTRHNVASH LQKYRMRRRP ILPKEDDRRW PHHRKQESRS YYPYKPIMAY  360
PPYHSNHDLP TSPVYPMWGP TGSHTASMHT WGTPSYLPWP PTEIWHRKPY LGMHADAWGC  420
PVMPPLHSPF SSFPQNASGF QSASMVNNSC GIPQKSFDLQ PAEEVINMVV KEVINKPWLP  480
LPIGLKPPST DSVLAELSRQ GISSIPPLCS NSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-15271331363ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028251.10.0PREDICTED: two-component response regulator-like APRR2, partial
TrEMBLB9N2R70.0B9N2R7_POPTR; ARR-B family protein
STRINGPOPTR_0003s08600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.68e-90ARR-B family protein