PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024785.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 303aa    MW: 33787.8 Da    PI: 8.3829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024785.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.6e-1399150155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  CCG024785.1  99 QRMTHIAVERNRRKLMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 150
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-1697168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.65E-1297154No hitNo description
PROSITE profilePS5088814.65998149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1399165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-1099150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MALQALSSNE FLNFILYDSI SATPCSSHAS LETTSLLLEN LIPQDHGISV NSSSLMTGQI  60
CSMGREAVNR RHNLLAVQGK KKRRRKPRVC KNREDAETQR MTHIAVERNR RKLMNEHLAV  120
LRSLMPESYV QRGDQASIVG GAIEFVKELE HLLQSLEAKK LKLKQGLTGP NYSTENATTT  180
SEFPPPPFSQ FFVCPQYTWS QIPSNFTSKT AASIADIEAT LIETHANLRI LSRRSPTQLS  240
KLVSGFHMLY LTVLHINVTT MDPLVLYSIS AKLEEGCQLT SVDDLAGAVH HMLRIIEQEA  300
ALC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984KKKRRR
27985KKKRRRK
37986KKKRRRKP
48085KKRRRK
599110RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028170.10.0PREDICTED: transcription factor bHLH71
SwissprotQ56XR01e-73BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A2K2B4790.0A0A2K2B479_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.14e-66beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]