PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG024695.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 252aa MW: 27994 Da PI: 4.9655 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38.9 | 2.7e-12 | 3 | 49 | 54 | 101 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 +e+e+ fF++r++ky++g+r+ ra++ gyWkatgkdk+v+ +g+ vg CCG024695.1 3 GEEETCFFTPRNRKYRNGSRPDRAAEGGYWKATGKDKTVKY-RGTPVG 49 46799**********************************99.555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.123 | 1 | 97 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.28E-16 | 2 | 72 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
RYGEEETCFF TPRNRKYRNG SRPDRAAEGG YWKATGKDKT VKYRGTPVGN WISILERLYR 60 LADWVLCKIY KKTKKPKDVR NRQRDEENST LTAMDNVDYV NNHDEDRTVL PVMDAGYVGE 120 MDNVGADAVF TDDYSQQEIA SSEFPADFNL HAASYSGMFP SLAETCGDPA SVFSNSDNLS 180 TLYDLLNPAN FHWNIDDPLF DLHTSVPINI PGNPVPAPGN LANPASPCNL PAANHVPSSR 240 NLPSAYLAPP GN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-16 | 2 | 72 | 68 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-16 | 2 | 72 | 68 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-16 | 2 | 72 | 68 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-16 | 2 | 72 | 68 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-16 | 2 | 72 | 71 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-16 | 2 | 72 | 71 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-16 | 2 | 72 | 71 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-16 | 2 | 72 | 71 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-16 | 2 | 72 | 71 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-16 | 2 | 72 | 71 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-16 | 2 | 72 | 71 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-16 | 2 | 72 | 71 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-16 | 2 | 72 | 68 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-16 | 2 | 72 | 68 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002304383.2 | 1e-146 | NAC domain-containing protein 2 | ||||
TrEMBL | B9GZX0 | 1e-144 | B9GZX0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s10250.1 | 1e-145 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28277 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 2e-18 | NAC family protein |