PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024620.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 318aa    MW: 35107.6 Da    PI: 9.5023
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024620.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY461.1e-142663042259
                  EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++YY+C+s  gCp++k+ver+ +dp+++++tYegeH h+
  CCG024620.1 266 KGYYKCSSVrGCPARKHVERALDDPSILVVTYEGEHSHT 304
                  78*****988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.4E-17211256IPR018872Zn-cluster domain
SuperFamilySSF1182909.68E-15256304IPR003657WRKY domain
SMARTSM007745.6E-16258305IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-15261304IPR003657WRKY domain
PfamPF031063.7E-12265303IPR003657WRKY domain
PROSITE profilePS5081117.385266306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAVELMMAYR NSGFLVTKME ENAVEEAASG LESVNKLIRL LSQQNPENLH QSSTPTSRTF  60
MDVEMDCKAV PDVAAPKFKK VASLLSRNRT GHARFRRAPV TAPPVNQRQE QDYQVLEANQ  120
VYYATPIQQI PPPVHNQNHY PIVEPKNGEI ERKDSATTIN FSCSSAGNSF VSSLTGDTDS  180
KQPSSSSSFH ITNVSRVSSA GKPPLSTSSL KRKCSSENSD SAGKCASSGR CRCSKKRKMR  240
LKRVVRVPAI SLKMSDIPPD DYSWRKGYYK CSSVRGCPAR KHVERALDDP SILVVTYEGE  300
HSHTISVAET SNHILESS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774400.0GQ377440.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008783.10.0PREDICTED: probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX01e-72WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLU5GIR00.0U5GIR0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s18490.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.15e-64WRKY DNA-binding protein 7