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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CCG024596.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 266aa MW: 30013.9 Da PI: 6.4341 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 12.1 | 0.0006 | 38 | 60 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y C C+k F+++ L H++ H
CCG024596.1 38 YICARCSKGFPSSQALGGHQNAH 60
89******************988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 9.22E-6 | 36 | 65 | No hit | No description |
| Pfam | PF13912 | 7.6E-7 | 37 | 62 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 11.51 | 38 | 65 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 40 | 60 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 266 aa Download sequence Send to blast |
MVTNLLQGKA NSCESSNARS ITRENLPTLL SLQQPDAYIC ARCSKGFPSS QALGGHQNAH 60 KRERNEERRQ MLEKRGRMML EERSRMMMME EYLSMKEMNC TTPAILSPHP LHAVTPNGED 120 MIPFLIQIPM PNQGNGLIMN PETLLSFHSR NGQTSFMPGS GFDPSLGDKG AYHQISHRFH 180 HEGYEIPYVI PHAIDNNHRP AYPTINKNLN PWELDTNSIT NFDQSVAWMR ESSNAVVAEA 240 STGAFVKGQE TTEVTFNEEL DLNLRL |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | B9HA05 | 1e-152 | B9HA05_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0006s20920.1 | 1e-153 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF17044 | 5 | 5 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G06650.1 | 1e-09 | C2H2 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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