PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024547.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 334aa    MW: 37669 Da    PI: 5.1517
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024547.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.2e-31165223259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++prsYYrC+s  gC ++k+vers++dp++++itY+ eH h 
  CCG024547.1 165 SDMWAWRKYGQKPIKGSPYPRSYYRCSSLkGCLARKQVERSSTDPSIFIITYTAEHSHA 223
                  79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-32150225IPR003657WRKY domain
SuperFamilySSF1182903.53E-26158225IPR003657WRKY domain
PROSITE profilePS5081131.892159225IPR003657WRKY domain
SMARTSM007744.1E-36164224IPR003657WRKY domain
PfamPF031062.9E-25166222IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSSESACMEE SWDLQAVVRS GCSTNYQEFA NNMNNPPSLF APLSFDTDEL LISQETYETP  60
TDFDELDDLY RPFYPVLHQT LNSSQNNILG TCTNTTPIGT CTNTASMSVR KEVKERPKVQ  120
KKKPLSEPAT CPNSSTDATS TAKSKRRENQ HKRVVQHVKE DGLSSDMWAW RKYGQKPIKG  180
SPYPRSYYRC SSLKGCLARK QVERSSTDPS IFIITYTAEH SHARPTRRSS LAGSTRIKRD  240
AIPKGTTPSI EPNMPTIKDQ RSPNFDGLIS PTTPSMTSIE DEFVQNLSNK NEELLDHGQI  300
LEENESKEIF FPDVVFSDDL FPTLEDLEGF LLDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-191652261780Disease resistance protein RRS1
5w3x_D5e-191652261780Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029360.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLA0A3N7FWR60.0A0A3N7FWR6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s09900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-39WRKY family protein