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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG024505.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 623aa MW: 69424.7 Da PI: 6.4306 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.7 | 3.7e-12 | 424 | 472 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++h Er+ R+++N++f L++++P+ + K++K++iL +++eY+++L+ CCG024505.1 424 CASHALSERKQREKLNNRFMILKSIVPSiS------KVDKVSILDETIEYLQELE 472 689*************************66......****************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.4E-51 | 15 | 193 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.624 | 422 | 471 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.68E-12 | 422 | 476 | No hit | No description |
Pfam | PF00010 | 4.2E-10 | 424 | 472 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.23E-15 | 425 | 486 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.8E-16 | 426 | 485 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-13 | 428 | 477 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MATKLHNQER LPGNLKKQLA LAVRSIQWSY AIFWSISARQ PGVLEWGDGY YNGDIKTRKT 60 IQSIELDEDE LGLQRSEQLR ELYESLSVGE ASPQARRPSA ALSPEDLTDT EWYYLVCMSF 120 IFDIGQGLPG TTLANGHPTW LCNAHYADSK VFSRSLLAKT VVCFPFMRGV IELGVTEQVL 180 EDPSLINHIK TSFLEIPYAV AAQNSSARSD KELACATFNR ETLDTKPIPV IGCGEIDITS 240 PNRNSNDQLA ADSIMVEGLN GGASQMQSLQ FMDDDHSVHH SLNSSDCISQ TIVDPVKVVP 300 ILKNVKVNNQ NHLDVQDCNH TKLTSLDLRS EDFHYQSVLS CLLKTSNPLI LGPDVQNCYQ 360 ESSFVSWKKA GSVHAHKFKS GTRQKVLKKI LLEVPRMHVD GLLDSPEYNS NKVVVGRPEA 420 DENCASHALS ERKQREKLNN RFMILKSIVP SISKVDKVSI LDETIEYLQE LERKVEELGA 480 NRELLEVLTK RKPQDTAERT SDNYGSNKIG NGKHSLTNKR KAPDMDEMEP DINHNVSKDG 540 SAESITVSVN REDVLIEIKC LWREGILLEI MDVASHLHLD SHSVQSSTMD GILSLTIKSK 600 HKGLNAASIG TIKQALRRVA GKC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-15 | 15 | 193 | 9 | 192 | Transcription factor MYC3 |
4rqw_B | 1e-15 | 15 | 193 | 9 | 192 | Transcription factor MYC3 |
4rs9_A | 1e-15 | 15 | 193 | 9 | 192 | Transcription factor MYC3 |
4yz6_A | 1e-15 | 15 | 193 | 9 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation, but, in association with TTG1 and MYB0/GL1, promotes trichome formation, branching and endoreplication. Regulates also trichome cell wall maturation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Activates the transcription of GL2. {ECO:0000269|PubMed:11063707, ECO:0000269|PubMed:12917293, ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14561633, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15590742}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency and UV light. Negatively regulated by MYB66/WER, GL3 and BHLH2 in the developing non-hair cells, and positively regulated by CPC and TRY in the developing hair cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15590742, ECO:0000269|PubMed:17053893}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP723395 | 0.0 | KP723395.1 Populus tremula x Populus tremuloides clone INRA 353-38 GL3-like basic helix-loop-helix transcription factor (bHLH079) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029287.1 | 0.0 | PREDICTED: transcription factor GLABRA 3 | ||||
Swissprot | Q9FN69 | 0.0 | GL3_ARATH; Transcription factor GLABRA 3 | ||||
TrEMBL | A0A2K2BVJ7 | 0.0 | A0A2K2BVJ7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s09450.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2444 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41315.1 | 0.0 | bHLH family protein |