PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG024440.1 | ||||||||
Common Name | CBF2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 25273.3 Da PI: 6.046 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.2e-17 | 49 | 99 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr + ++Wv+e r+p +k+ r++lg++ t+e+Aa+a++ a+++l+g CCG024440.1 49 PVFRGVRKRN-GNKWVCEMREP---NKKSRIWLGTYPTPEMAARAHDVAALALRG 99 579****887.9******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-12 | 49 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-27 | 50 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-20 | 50 | 109 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.351 | 50 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-29 | 50 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-7 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.20E-27 | 51 | 109 | No hit | No description |
PRINTS | PR00367 | 4.1E-7 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MPIDRQEASS FSDSSTSRRV VHSDEEVLLA TSFPKKRAGR RIFRETRHPV FRGVRKRNGN 60 KWVCEMREPN KKSRIWLGTY PTPEMAARAH DVAALALRGK SACLNFADSA WRLPVPVSKD 120 SKDITRAANE AAELFRPQEF GGHPAKQQDS NAVLEDYSSE VCSDDCKTFQ ENDFFFEEAV 180 LDMPGLLVDM AEGLLLSPPR YVRNDCNDLD HMENGSDLSL WSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00002 | PBM | Transfer from 475045 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC345752 | 0.0 | KC345752.1 Populus euphratica C-repeat binding factor 4c mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011014145.1 | 1e-166 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
Refseq | XP_011029176.1 | 1e-166 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
Swissprot | Q9FJ93 | 5e-62 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A0N6ZD43 | 1e-164 | A0A0N6ZD43_POPEU; C-repeat/dehydration-responsive element-binding factor 2 | ||||
STRING | POPTR_0001s08710.1 | 1e-136 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 6e-53 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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