PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024415.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 183aa MW: 21234.1 Da PI: 9.6465

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024415.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.4	1.9e-06	79	116	2	32
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC......... CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas.......k 32 + h +Er+RR+ + + + Lr+llP + k CCG024415.1 79 KIIHRDIERQRRQGMANLYGSLRRLLPLKYlktvnyiK 116 55699**********************96546666662 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.04E-9	75	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.37E-5	77	123	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-4	79	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MDYISSVFQI DDNSTDDLVQ YFSSFASQQQ TTPKDKVPLR PYEDCHDLAN KTQHGRRRKS 60 SIALGSVKDE NPNDNNKKKI IHRDIERQRR QGMANLYGSL RRLLPLKYLK TVNYIKHQEE 120 KIQKLIDKKD ELKRYLSTSS ALENLEGYER DTLTVRTCCV GVEVGINTAL KKGFPLSRVL 180 EER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002299575.1	1e-115	transcription factor bHLH36
TrEMBL	B9GKR8	1e-113	B9GKR8_POPTR; Uncharacterized protein
STRING	POPTR_0001s08380.1	1e-114	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	2e-17	bHLH family protein