PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024305.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 296aa MW: 33249.7 Da PI: 9.5719

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024305.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.2	1.5e-32	51	104	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrW+p+LH++Fv+ave+LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+ CCG024305.1 51 PRLRWAPDLHHCFVHAVERLGGEDRATPKMVLQIMDVKGLTISHVKSHLQMYRS 104 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.499	47	107	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-31	47	106	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.6E-14	49	105	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-23	51	105	IPR006447	Myb domain, plants
Pfam	PF00249	7.4E-6	52	103	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MKKVENESSP NKGSPSSSLD IRVTQRGVAG SLQEKNMKSA TVRPYVRSKM PRLRWAPDLH 60 HCFVHAVERL GGEDRATPKM VLQIMDVKGL TISHVKSHLQ MYRSMKHEQM TQEAAMEAKK 120 NGKEPEIHHS NYLTHTMCCQ QNRQLNGKRL VNNNALLHQG RGAHNPANGF ALRNASFLTS 180 QREGLWIGKK VNEPFLHEEK TSKEWEQKPD NYIIFKDLLK SCNGTETNDQ DKTSAGAAGC 240 NKSNQSLEEL DEIAQRIDGD RMTLSLKSKV SESFLKLGKA KDSSDVNDVS LELTLA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-18	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-18	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-18	52	107	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-18	52	107	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-18	52	107	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-18	52	107	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-18	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-18	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-18	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-18	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-18	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-18	52	107	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149575	1e-107	AC149575.1 Populus trichocarpa clone Pop1-41G18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011008685.1	0.0	PREDICTED: uncharacterized protein LOC105114001
TrEMBL	A0A3N7EVF1	0.0	A0A3N7EVF1_POPTR; Uncharacterized protein
STRING	cassava4.1_021436m	1e-107	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-33	G2-like family protein