PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024294.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 359aa MW: 40609.3 Da PI: 8.5384

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024294.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.6	3.4e-55	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeel+++yL kkv + ++++ ++i +vd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ ++ CCG024294.1 17 LPPGFRFHPTDEELISHYLYKKVLDITFTA-KAIGDVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKF 112 79***********************999.88***********888999************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfykgrapkg kt+Wvmheyrle CCG024294.1 113 LVGMKKTLVFYKGRAPKGGKTNWVMHEYRLE 143 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-64	13	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.315	17	167	IPR003441	NAC domain
Pfam	PF02365	3.0E-29	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MENISGLGKE GDDQMDLPPG FRFHPTDEEL ISHYLYKKVL DITFTAKAIG DVDLNKSEPW 60 ELPWKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KFLVGMKKTL 120 VFYKGRAPKG GKTNWVMHEY RLEGKFSIHN LPKTAKNEWV ICRVFQKSSA GKKTHISGLV 180 RLGSFSNEFS PSGLPPLMDS SPYNCKIKPV AQSAYVPCFS NPINVQRNQQ DTIDSFDNHL 240 LAVSTNPFEV FPRIPLLNPF YTPQAILVLG HLQNSGSVLM QDHSILRALI ANQSTNMKQQ 300 SFKIEKDMVG VSQDSTTDMH TEIYSVISNL EVGKRSGDDQ DATPSTLVAS TDLDCFWNC

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MENISGLGKE GDDQMDLPPG FRFHPTDEEL ISHYLYKKVL DITFTAKAIG DVDLNKSEPW  60
ELPWKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIYRG KFLVGMKKTL  120
VFYKGRAPKG GKTNWVMHEY RLEGKFSIHN LPKTAKNEWV ICRVFQKSSA GKKTHISGLV  180
RLGSFSNEFS PSGLPPLMDS SPYNCKIKPV AQSAYVPCFS NPINVQRNQQ DTIDSFDNHL  240
LAVSTNPFEV FPRIPLLNPF YTPQAILVLG HLQNSGSVLM QDHSILRALI ANQSTNMKQQ  300
SFKIEKDMVG VSQDSTTDMH TEIYSVISNL EVGKRSGDDQ DATPSTLVAS TDLDCFWNC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	4e-54	14	173	17	174	NAC domain-containing protein 19
3swm_B	4e-54	14	173	17	174	NAC domain-containing protein 19
3swm_C	4e-54	14	173	17	174	NAC domain-containing protein 19
3swm_D	4e-54	14	173	17	174	NAC domain-containing protein 19
3swp_A	4e-54	14	173	17	174	NAC domain-containing protein 19
3swp_B	4e-54	14	173	17	174	NAC domain-containing protein 19
3swp_C	4e-54	14	173	17	174	NAC domain-containing protein 19
3swp_D	4e-54	14	173	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011005527.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-151	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	B9IDX4	0.0	B9IDX4_POPTR; Uncharacterized protein
STRING	POPTR_0015s02170.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-153	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]