PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023946.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 492aa    MW: 56184.3 Da    PI: 6.6733
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023946.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.16.3e-31246300155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+rlrWt+eLH+rF eav+qLGG+++AtPk +l++m++ gLt++hvkSHLQkYR+
  CCG023946.1 246 KERLRWTQELHDRFEEAVNQLGGPDRATPKGVLRAMGISGLTIYHVKSHLQKYRI 300
                  68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121651.9E-649134IPR021998Alfin
SuperFamilySSF579032.44E-18174238IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.9E-18178235IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500169.481183235IPR019787Zinc finger, PHD-finger
CDDcd156134.82E-32185235No hitNo description
SMARTSM002495.5E-10185233IPR001965Zinc finger, PHD-type
PROSITE patternPS013590186232IPR019786Zinc finger, PHD-type, conserved site
PfamPF006282.3E-10186234IPR019787Zinc finger, PHD-finger
PROSITE profilePS5129411.836243303IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-29244301IPR009057Homeodomain-like
SuperFamilySSF466891.15E-16245300IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-24246301IPR006447Myb domain, plants
PfamPF002492.7E-9248299IPR001005SANT/Myb domain
PfamPF143791.1E-18331375IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MEMTSSPRTV EEIFKDFSAR RAAVVRALTY DVDGFYGLCD PDKENLCLYG HPNETWEVTL  60
PAEEVPPELP EPALGINFAR DGMNRKDWLS LVAVHSDSWL LSVAFYLGAR LNRNERKRLF  120
SLINDLPTVF EVVTERKPVK EKPSVDSGSK SRGSIKRSSD GQTKSNPKLT EDSFEEEEDE  180
HTQTLCGSCG GNYNSDEFWI GCDVCERWYH GKCVKITPAK AESIKQYKCP SCMKRSRPYR  240
SDVSNKERLR WTQELHDRFE EAVNQLGGPD RATPKGVLRA MGISGLTIYH VKSHLQKYRI  300
SKFIPETNRG KYERRNISEM LPNFSATSGA QLNEALLMQM EVQKRLSDQL EVQKSLKIKI  360
EAQGRFLERI VEENRNRSAS INPIPIHSKT FSPVSQPSLC DESESNAKEF ETDSEGEKAE  420
IQPEEYLQAP KRLRTENHAL PSRYQLQPLN PDPYNQNMVL QRDAKFSYPS HDANFPWNIL  480
ATCPSSLVPS FF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xvl_A8e-6051391135PHD finger protein ALFIN-LIKE 2
5xvw_A8e-6051391135PHD finger protein ALFIN-LIKE 2
5xvw_B8e-6051391135PHD finger protein ALFIN-LIKE 2
5xvw_C8e-6051391135PHD finger protein ALFIN-LIKE 2
5xvw_E8e-6051391135PHD finger protein ALFIN-LIKE 2
5y21_A8e-6051391135PHD finger protein ALFIN-LIKE 2
5y21_B8e-6051391135PHD finger protein ALFIN-LIKE 2
5y53_A8e-6051391135PHD finger protein ALFIN-LIKE 2
5y53_B8e-6051391135PHD finger protein ALFIN-LIKE 2
5y53_C8e-6051391135PHD finger protein ALFIN-LIKE 2
5y53_E8e-6051391135PHD finger protein ALFIN-LIKE 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1475810.0EF147581.1 Populus trichocarpa clone WS0123_J18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019105.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X1
TrEMBLA0A175YJ250.0A0A175YJ25_DAUCS; Uncharacterized protein
STRINGPOPTR_0006s10190.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106592535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-54G2-like family protein