PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023905.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 505aa    MW: 55838.1 Da    PI: 9.0926
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023905.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.1e-31212269260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +Dgy+WrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d++++ei+Y+g+Hnh+k
  CCG023905.1 212 EDGYKWRKYGQKQVKGSENPRSYYKCTYPHCTTKKKVERSL-DGQITEIVYKGSHNHSK 269
                  7****************************************.***************85 PP
2WRKY104.27e-33373431159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+Cts gCpv+k+ver+++d ++v++tYeg+Hnh+
  CCG023905.1 373 LDDGYRWRKYGQKVVRGNPNPRSYYKCTSVGCPVRKHVERASHDLRAVITTYEGKHNHD 431
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-26204270IPR003657WRKY domain
PROSITE profilePS5081122.951206270IPR003657WRKY domain
SuperFamilySSF1182901.14E-23207270IPR003657WRKY domain
SMARTSM007746.1E-33211269IPR003657WRKY domain
PfamPF031061.1E-23212267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-36358433IPR003657WRKY domain
SuperFamilySSF1182901.01E-28365433IPR003657WRKY domain
PROSITE profilePS5081138.411368433IPR003657WRKY domain
SMARTSM007748.0E-38373432IPR003657WRKY domain
PfamPF031064.9E-25374431IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MDNLSWGLYD HGTNDRNGIE IPNFESFQLP SLPLSPPPVS PSSYWAIPPR LSPTELLDSP  60
VLFPTSHALA SPTRGSFAGQ TFNWRSNSND NHTQRGVSGE EKDCSDFSFQ NQTRPPTISS  120
SSSSLFRSSS NSAVVEKSLK RKHEEWNFNQ SKQTDFSLDQ KTGVKSVSAP VQSFSSELVP  180
LQASMQNSTA PKPSYNQYNR AGHYTRENGR SEDGYKWRKY GQKQVKGSEN PRSYYKCTYP  240
HCTTKKKVER SLDGQITEIV YKGSHNHSKP QSTRRSSSQS VYPSGGANSE ISYQSGAPME  300
SGMMQEDSSI SLGEDDIDHS SPISNSGGED NENEPDAKRW LGQNENESTL GAGSKTVREP  360
RIVVQTTSDI DILDDGYRWR KYGQKVVRGN PNPRSYYKCT SVGCPVRKHV ERASHDLRAV  420
ITTYEGKHNH DVPAARGRGN VNKAPSNANS TANAPIPVRP SVMASHSNQT SYHPNSLHST  480
RLLPTSGSQA PFTLQMLQSQ GSFGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-36212434878Probable WRKY transcription factor 4
2lex_A6e-36212434878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011019054.10.0PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 33
SwissprotQ6B6R41e-123WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2K2A0220.0A0A2K2A022_POPTR; Uncharacterized protein
STRINGPOPTR_0006s10600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-116WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]