PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023731.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 789aa MW: 87623.9 Da PI: 6.8682

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023731.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26	2.1e-08	49	97	3	47
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G+ ++++I r+++ + q++++++ + CCG023731.1 49 AWTHQEEESFFNALRQVGKAcycwnNFEKITRHVQ-SKNKDQVRHYYYRL 97 6***************99***********.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.5E-8	41	102	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.459	45	102	IPR017884	SANT domain
SMART	SM00717	2.6E-4	46	100	IPR001005	SANT/Myb domain
Pfam	PF00249	7.2E-6	49	97	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.5E-4	49	104	IPR009057	Homeodomain-like
CDD	cd00167	2.70E-6	49	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MEPQVSLDSE RHLHRNSSIQ VGDPGVTSST PDRVEPRQPE KRPTRQWAAW THQEEESFFN 60 ALRQVGKACY CWNNFEKITR HVQSKNKDQV RHYYYRLVRR MNKLLGPGLC LDAKNSKDTN 120 AAMLRWWSLL AKYSCKASKL HLKPRRFKIF VEALENQLLK DRRKNVRKRS SQGENGSPTT 180 PSIITNQNRA SGHDTRTVKL VLVDSQNIQK LGGGKGSLKR NVNLGVIRNN NKGDSTAMKP 240 ARQRRKPASS AAYKKWEKAA IAGVSLVADA AEHLERTAPD KEFEHDQGQK GLDSVENVLP 300 QLPASLLHDV ESSAHNNMKL KLQLFPIDDG TRRALEMDKH NPHLELTLST RKKISSVLEH 360 LNRKWGNSTV ASGELMLFPY VVNRENLVGY QRWTQESLVS AADVYLSIGS PPVFRLRYGW 420 FSNANFASMT LQAPSTYSCL TDGGNEKGKA MDSVSITEPS TGDQFLEEPS RDCPTSMNSN 480 HASTPHSAGV SNETNEFIDI GPINNLVKSF DPAANTSWHR TETDDRTGTQ QLEDVDGLRL 540 SNVNVLSAGE WADSLTDVSI GDLLSELPHE ADFNCVEPIV QSNQCLQQIP FSCDSFDAAI 600 AAHISRHQSK MGFVSSVTSH TSSIWDGEET CDAFAFQRNH SLRKEVTTSA VASPQVGKQM 660 DRTSSIASGA FLEELPDFVG PMDYPTGEDC MCLSDSQAGN NQAKNFNGLT DIYWPDSLGQ 720 LDLDIPSTKY HAEDLILSDS LGGLNHLIAS SLDAFQNCSF FGLNKKDLTS TVEARETTSF 780 SDFKIGSGI

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MEPQVSLDSE RHLHRNSSIQ VGDPGVTSST PDRVEPRQPE KRPTRQWAAW THQEEESFFN  60
ALRQVGKACY CWNNFEKITR HVQSKNKDQV RHYYYRLVRR MNKLLGPGLC LDAKNSKDTN  120
AAMLRWWSLL AKYSCKASKL HLKPRRFKIF VEALENQLLK DRRKNVRKRS SQGENGSPTT  180
PSIITNQNRA SGHDTRTVKL VLVDSQNIQK LGGGKGSLKR NVNLGVIRNN NKGDSTAMKP  240
ARQRRKPASS AAYKKWEKAA IAGVSLVADA AEHLERTAPD KEFEHDQGQK GLDSVENVLP  300
QLPASLLHDV ESSAHNNMKL KLQLFPIDDG TRRALEMDKH NPHLELTLST RKKISSVLEH  360
LNRKWGNSTV ASGELMLFPY VVNRENLVGY QRWTQESLVS AADVYLSIGS PPVFRLRYGW  420
FSNANFASMT LQAPSTYSCL TDGGNEKGKA MDSVSITEPS TGDQFLEEPS RDCPTSMNSN  480
HASTPHSAGV SNETNEFIDI GPINNLVKSF DPAANTSWHR TETDDRTGTQ QLEDVDGLRL  540
SNVNVLSAGE WADSLTDVSI GDLLSELPHE ADFNCVEPIV QSNQCLQQIP FSCDSFDAAI  600
AAHISRHQSK MGFVSSVTSH TSSIWDGEET CDAFAFQRNH SLRKEVTTSA VASPQVGKQM  660
DRTSSIASGA FLEELPDFVG PMDYPTGEDC MCLSDSQAGN NQAKNFNGLT DIYWPDSLGQ  720
LDLDIPSTKY HAEDLILSDS LGGLNHLIAS SLDAFQNCSF FGLNKKDLTS TVEARETTSF  780
SDFKIGSGI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018734.1	0.0	PREDICTED: TSL-kinase interacting protein 1 isoform X1
Refseq	XP_011018735.1	0.0	PREDICTED: TSL-kinase interacting protein 1 isoform X1
Swissprot	Q8LJT8	0.0	TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBL	A0A2K2A181	0.0	A0A2K2A181_POPTR; Uncharacterized protein
STRING	POPTR_0006s12730.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9883	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	0.0	TSL-kinase interacting protein 1