PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023727.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 199aa MW: 21455 Da PI: 6.8014

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023727.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.9	7.5e-34	53	118	6	71
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssas 71 ++++++hTkv+gR+RRvR++a++aar+F+L++eLG+ +d++tieWLl++a+++i+++tgt+++++ CCG023727.1 53 SQSKDRHTKVNGRGRRVRMPALTAARVFQLTRELGHRSDGETIEWLLRNAEASIIAATGTGTIPSI 118 678*********************************************************988883 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-28	54	122	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.994	55	109	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MVLDNLSSTS NNQQKQQQNS NLNNNNHVVP TTIPAASSGS DSKLAHPRKS TASQSKDRHT 60 KVNGRGRRVR MPALTAARVF QLTRELGHRS DGETIEWLLR NAEASIIAAT GTGTIPSIPI 120 STTVGPAPIS ASPPSVSGEV HPAIDTGPDV FSLTEASCRL DLDYRHMPFT ALLLKPLSEN 180 VDLEAEEGRQ EEVIGEQKM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018727.1	1e-145	PREDICTED: transcription factor TCP11
TrEMBL	A0A2K2A187	1e-125	A0A2K2A187_POPTR; Uncharacterized protein
STRING	POPTR_0006s12770.1	1e-126	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	6e-31	TCP family protein