PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023655.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 529aa MW: 57622.4 Da PI: 5.8642

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023655.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.7	0.00011	380	400	35	55
TS-STCHHHHHHHHHHHHHHH CS HLH 35 skKlsKaeiLekAveYIksLq 55 s++++Ka++L +A++Y+ksLq CCG023655.1 380 SERVDKASMLGEAIDYLKSLQ 400 7899****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.05E-4	369	404	No hit	No description
SuperFamily	SSF47459	1.11E-6	378	423	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-5	379	408	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MELVWENGQV LMRVLSTSSS CTSYTPHPIK NVSEVENNSD GYSTKRPRLG TGDSILGDFP 60 LIDDRELAKR DSKPSQDDHQ PELFSELCET NLNMLLENNE NNIYEKNITD GAHVVPGYND 120 ANWRPGNASE VAAEVPQLTT ASNGQLYQSF LEQHKASAPL FHGLPNSKLQ QVDSGSDNHS 180 RLQNLSHILR PALPNPNQGS NATRGPASSR LQQLKSNTDE PPAGRRNLES GQMVPTYASK 240 VSKYFHDQQY LLESQIVPIG PIDRSAEASP PDEQSEAVLH NYATTTKRCC DRIFGSTSGS 300 AEKTIKGKPD RGKSIDQLTA TTSICSRGAS NDPTSSLERQ YEDTEGTAYT SDDLEEEEQV 360 PARGSAGSKR RRATEIHNLS ERVDKASMLG EAIDYLKSLQ LQVQMMSMGT RLCMPLMMLP 420 TGMQHIHSPL LAQFSPMGVG MDTRLMQMGV GCSPATFPAS GMFGLPAGQM LPMSVSQAPF 480 FPLNIGGHST HSSVPMPALS GVVSTPLEFL RSAVFPSSKD IIHSNTSAR

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MELVWENGQV LMRVLSTSSS CTSYTPHPIK NVSEVENNSD GYSTKRPRLG TGDSILGDFP  60
LIDDRELAKR DSKPSQDDHQ PELFSELCET NLNMLLENNE NNIYEKNITD GAHVVPGYND  120
ANWRPGNASE VAAEVPQLTT ASNGQLYQSF LEQHKASAPL FHGLPNSKLQ QVDSGSDNHS  180
RLQNLSHILR PALPNPNQGS NATRGPASSR LQQLKSNTDE PPAGRRNLES GQMVPTYASK  240
VSKYFHDQQY LLESQIVPIG PIDRSAEASP PDEQSEAVLH NYATTTKRCC DRIFGSTSGS  300
AEKTIKGKPD RGKSIDQLTA TTSICSRGAS NDPTSSLERQ YEDTEGTAYT SDDLEEEEQV  360
PARGSAGSKR RRATEIHNLS ERVDKASMLG EAIDYLKSLQ LQVQMMSMGT RLCMPLMMLP  420
TGMQHIHSPL LAQFSPMGVG MDTRLMQMGV GCSPATFPAS GMFGLPAGQM LPMSVSQAPF  480
FPLNIGGHST HSSVPMPALS GVVSTPLEFL RSAVFPSSKD IIHSNTSAR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147063	0.0	EF147063.1 Populus trichocarpa clone WS01226_P13 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011016536.1	0.0	PREDICTED: transcription factor PIF3-like isoform X2
TrEMBL	B9I999	0.0	B9I999_POPTR; Uncharacterized protein
STRING	POPTR_0014s10700.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13329	18	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46970.1	2e-18	phytochrome interacting factor 3-like 1