PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023591.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 194aa MW: 22043.8 Da PI: 4.584

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023591.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	94.4	1.8e-29	10	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGf F+P+deel+ ++L +k++ +++ ++i+++++y +Pw+L+ ++ ++e++wy+Fs+ + n+at +g+Wk +++++s+ g CCG023591.1 10 LPPGFIFSPSDEELILHFLDRKASLLPCQP-DIIPDLGLYPQDPWQLEGRALSSENQWYYFSRVME--------NQATGNGFWKPLDIEEPIFSSsAG 98 79***********************999.99***********77778899**9865........56899**********98789 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vglkk Lv+ p+g++t+W+m+ey+l CCG023591.1 99 KKVGLKKYLVYC--IGPEGVETNWMMQEYHL 127 99*****9..6899*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-38	9	155	IPR003441	NAC domain
PROSITE profile	PS51005	37.619	10	156	IPR003441	NAC domain
Pfam	PF02365	4.8E-18	11	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MGDHGCSGNL PPGFIFSPSD EELILHFLDR KASLLPCQPD IIPDLGLYPQ DPWQLEGRAL 60 SSENQWYYFS RVMENQATGN GFWKPLDIEE PIFSSSAGKK VGLKKYLVYC IGPEGVETNW 120 MMQEYHLCSS KSSGKSYKRK QKLDCSKWIL CRVYQREGSC SRSSNHSDDD GTELSCLDEM 180 FLSMDDLDDI SFPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-32	9	162	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-32	9	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-32	9	162	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-32	9	162	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-31	9	162	19	174	NAC domain-containing protein 19
3swm_B	1e-31	9	162	19	174	NAC domain-containing protein 19
3swm_C	1e-31	9	162	19	174	NAC domain-containing protein 19
3swm_D	1e-31	9	162	19	174	NAC domain-containing protein 19
3swp_A	1e-31	9	162	19	174	NAC domain-containing protein 19
3swp_B	1e-31	9	162	19	174	NAC domain-containing protein 19
3swp_C	1e-31	9	162	19	174	NAC domain-containing protein 19
3swp_D	1e-31	9	162	19	174	NAC domain-containing protein 19
4dul_A	9e-32	9	162	16	171	NAC domain-containing protein 19
4dul_B	9e-32	9	162	16	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU286151	1e-133	GU286151.1 Populus balsamifera isolate NWL07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286152	1e-133	GU286152.1 Populus balsamifera isolate HAY07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286153	1e-133	GU286153.1 Populus balsamifera isolate HAY07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286154	1e-133	GU286154.1 Populus balsamifera isolate MGR10 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286155	1e-133	GU286155.1 Populus balsamifera isolate MGR10 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286156	1e-133	GU286156.1 Populus balsamifera isolate FRE01 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286157	1e-133	GU286157.1 Populus balsamifera isolate FRE01 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286158	1e-133	GU286158.1 Populus balsamifera isolate KUU07 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286159	1e-133	GU286159.1 Populus balsamifera isolate KUU07 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286160	1e-133	GU286160.1 Populus balsamifera isolate STL13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286161	1e-133	GU286161.1 Populus balsamifera isolate STL13 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286162	1e-133	GU286162.1 Populus balsamifera isolate POR11 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286163	1e-133	GU286163.1 Populus balsamifera isolate POR11 haplotype B no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286164	1e-133	GU286164.1 Populus balsamifera isolate LOV02 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286166	1e-133	GU286166.1 Populus balsamifera isolate FBK13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286168	1e-133	GU286168.1 Populus balsamifera isolate GAL12 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286170	1e-133	GU286170.1 Populus balsamifera isolate INU03 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286172	1e-133	GU286172.1 Populus balsamifera isolate RNA13 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286174	1e-133	GU286174.1 Populus balsamifera isolate STO11 haplotype A no apical meristem (NAM) family protein gene, partial sequence.
GenBank	GU286176	1e-133	GU286176.1 Populus balsamifera isolate WHR03 haplotype A no apical meristem (NAM) family protein gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011031172.1	1e-143	PREDICTED: NAC domain-containing protein 18-like
Swissprot	Q8GWK6	3e-65	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2K2ACF6	1e-127	A0A2K2ACF6_POPTR; Uncharacterized protein
STRING	POPTR_0005s06510.1	1e-128	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-65	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]