PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023532.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 314aa    MW: 34813.4 Da    PI: 8.1561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023532.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-13101152155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ +r+++P++   + ++++ a+i   A++++k+L+
  CCG023532.1 101 QRMTHIKVERNRRKQMNDYLSVIRSMMPPS---YVQRPDQASIIGGAINFVKELE 152
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-11100154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.481100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-15100171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-10100156No hitNo description
PfamPF000102.2E-10101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-7106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MALETVVFQQ GPSSTLGLGA TWIHGFGLEG EKATYHETLN TTIGNIGSDF HPNNNWDTNN  60
SPSQEISCAC KGGFFTGGNA AGRRKRQRRI SIKDEAEVAH QRMTHIKVER NRRKQMNDYL  120
SVIRSMMPPS YVQRPDQASI IGGAINFVKE LEKLTQCLEA LKQVNKVQSG IDSNCSSLFS  180
DFFSFSQYST ASSTNKRSNS YNSLPSTDSM LAEKRPIAIA DVEVTMTEGH ANLKILSRRH  240
PKQLLKMVTG LHSLGLHTLH LNVTTVGQMV FYSFSVKVED ECRLTSVDEI AAAVHEIVGR  300
IQEDAISNCM PRSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101112RMTHIKVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164470.0AC216447.1 Populus trichocarpa clone ACSB1045-A16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031077.10.0PREDICTED: transcription factor bHLH94-like isoform X2
SwissprotQ9SK914e-61BH094_ARATH; Transcription factor bHLH94
TrEMBLB9H4P90.0B9H4P9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s07210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-51bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]