PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023498.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 341aa    MW: 37873 Da    PI: 6.9289
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023498.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05133154223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   C +Cgk F+   nL+ H+r H
  CCG023498.1 133 FCDICGKGFKIDANLRMHMRAH 154
                  6*******************99 PP
2zf-C2H2171.7e-05222244123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+ksFs   +Lk+H++ +
  CCG023498.1 222 YSCNRCHKSFSVLADLKSHLKHC 244
                  99******************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.55E-7131154No hitNo description
SMARTSM003550.016132154IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.7E-5132155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.468132159IPR007087Zinc finger, C2H2
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SMARTSM0035560184217IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.55E-7217242No hitNo description
Gene3DG3DSA:3.30.160.601.9E-4220252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.1222243IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66222248IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSNPGESTRN PTGYSFHVNR NTDPRVPLLN LSTVCTRMDS LKQFLSESVN NNTLISKDQM  60
DMVSSEISSA INQIIVNAAA LLSSSSSSSQ PFVPQPPVES TAIKKAQVLK VENREENEEE  120
LDAVELLAEH VHFCDICGKG FKIDANLRMH MRAHRNQFKT LEALAKPDKG DKTISASLAG  180
KTNFSCPFEG CNRNKKHSKF KPLMSVICVR NHFKRSHCPK MYSCNRCHKS FSVLADLKSH  240
LKHCGESRWK CSFGTSFSRK DKLFGRMALF EGHMPAVVGE EAESKAKGLV VGGAVALEED  300
DEEEESVVKG DDLVDNEFFE GLPFGFGSME GYNLQDVWGL L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031036.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLB9HFF70.0B9HFF7_POPTR; Uncharacterized protein
STRINGPOPTR_0007s05340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-64C2H2 family protein