PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023492.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GeBP

Protein Properties

Length: 474aa MW: 52264 Da PI: 4.7924

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023492.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	117.4	8e-37	144	238	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +qr+ws+eDeiv+L+G+i+f++++gk++++d+ +fy fvk+s+ f++s++q+v+Kir LKkK+ ++v+k +sgk +f+k+hd ++ el+kkiWg CCG023492.1 144 SQRIWSDEDEIVILKGMIEFQNEKGKNSTADTGDFYGFVKESLCFNASNNQFVNKIRMLKKKYFTDVEKNESGKYETFKKPHDLECVELAKKIWG 238 79********************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.0E-30	145	238	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MARKHLIEEP PPAVSSSEEE ETDDKEEEPQ NGTAKTQQNA AGEKSNDDED RTEDDEEEDD 60 DEEVEKKKPD LPSKPSKPSS ESDSDADSED TESTHPPSPS LSGFTIKPIS PKLKPDPKPD 120 QPKKEKDVDD KKAKKGAGPE TGGSQRIWSD EDEIVILKGM IEFQNEKGKN STADTGDFYG 180 FVKESLCFNA SNNQFVNKIR MLKKKYFTDV EKNESGKYET FKKPHDLECV ELAKKIWGAG 240 AIVVGNESNA SKNSGKNVSG GGGGIILALA KLGSGEVNGK GKEASVKRGK RGSSEEVSGE 300 GKQGNLKKKK RVLSEEGDGG EEGNVKKGKR GLSEEVIGER KGKGGKKEKQ AANNELSGGE 360 DANVKKQKRV VNGEWKESSM KKQKAVENEE VEGGENLWDK YPYLRSSLLA EDLPEDVKER 420 AMMMLGKVPE ENLVELEREW RSLMNAKLEF FMMENDLIAK QMKLALDALK SQDY

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MARKHLIEEP PPAVSSSEEE ETDDKEEEPQ NGTAKTQQNA AGEKSNDDED RTEDDEEEDD  60
DEEVEKKKPD LPSKPSKPSS ESDSDADSED TESTHPPSPS LSGFTIKPIS PKLKPDPKPD  120
QPKKEKDVDD KKAKKGAGPE TGGSQRIWSD EDEIVILKGM IEFQNEKGKN STADTGDFYG  180
FVKESLCFNA SNNQFVNKIR MLKKKYFTDV EKNESGKYET FKKPHDLECV ELAKKIWGAG  240
AIVVGNESNA SKNSGKNVSG GGGGIILALA KLGSGEVNGK GKEASVKRGK RGSSEEVSGE  300
GKQGNLKKKK RVLSEEGDGG EEGNVKKGKR GLSEEVIGER KGKGGKKEKQ AANNELSGGE  360
DANVKKQKRV VNGEWKESSM KKQKAVENEE VEGGENLWDK YPYLRSSLLA EDLPEDVKER  420
AMMMLGKVPE ENLVELEREW RSLMNAKLEF FMMENDLIAK QMKLALDALK SQDY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU233370	4e-83	CU233370.1 Populus EST from severe drought-stressed opposite wood.
GenBank	CU233985	4e-83	CU233985.1 Populus EST from severe drought-stressed opposite wood.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011016051.1	0.0	PREDICTED: nucleolin-like
TrEMBL	A0A2K2AD05	0.0	A0A2K2AD05_POPTR; Uncharacterized protein
STRING	POPTR_0005s07650.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23171	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	6e-25	DNA-binding storekeeper protein-related transcriptional regulator