PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023432.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 331aa MW: 35983.7 Da PI: 9.5629

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023432.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.4	3.7e-14	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky CCG023432.1 67 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 111 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-17	61	117	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.291	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-7	65	117	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-18	65	114	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-11	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	8.3E-12	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	2.96E-9	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MIMNTNTSSS TSTAGAGTEA NPGGPAQSMA TPPPLAAATA ASGTISATSS DGSGKKVRKP 60 YTITKSRESW TEEEHDKFLE ALQLFDRDWK KIEDFVGSKT VIQIRSHAQK YFLKVQKNGT 120 IAHVPPPRPK RKASHPYPQK ASKNVLLPLP VSMAYPSSMN TFTPGYAPWD ETSMLITSAT 180 RKIMPSQDEL ANFHGAEADI GTKDVSDIGT KGVSRFSYNT VSGLGTSSRA LPSAEMPKQG 240 KQAPVRHDIP DFAEVYSFIG SVFDMETKGH VKKLNEMDRI NFETVLVLMR NLTVNLSSPD 300 FESFRKVLSS YDVNSKTLGV AALNQTNDIA C

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148355	0.0	EF148355.1 Populus trichocarpa x Populus deltoides clone WS01313_L11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011048426.1	0.0	PREDICTED: protein REVEILLE 8-like isoform X1
Refseq	XP_011048427.1	0.0	PREDICTED: protein REVEILLE 8-like isoform X1
Swissprot	Q8RWU3	1e-131	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	A0A2K1XCP4	0.0	A0A2K1XCP4_POPTR; Uncharacterized protein
STRING	POPTR_0016s08470.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6735	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	1e-130	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]