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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 25690.2 Da PI: 5.3516 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.9e-18 | 39 | 90 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr ++ +g+Wv+eIr p++ + r++lg+f t+e+Aa+a++ a++ ++g+ CCG023428.1 39 PSYRGVRMRH-WGKWVSEIRQPKK---KSRIWLGTFSTPEMAARAHDVAALTIKGH 90 57*****999.**********854...6***********************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-12 | 39 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.52E-33 | 39 | 99 | No hit | No description |
SuperFamily | SSF54171 | 2.42E-21 | 40 | 98 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.2E-38 | 40 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.55 | 40 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 40 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MKDSTKQESQ NSSKRNQDPE NNYESDKQAK SRGNAGRHPS YRGVRMRHWG KWVSEIRQPK 60 KKSRIWLGTF STPEMAARAH DVAALTIKGH SAHLNFPELA HEFPRPASSS PKDIQAAAAL 120 AATLSCKTGQ KGRETEAEAE LMLPCSLDST LASNETQEYS LSSPLRDDDD DDTFIDLPDI 180 LQDISHQFDE FCYLSPWQPV GTETSDVGFW HQEDLSLWEY QSSRNIY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 31 | 103 | 5 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155926 | 0.0 | EF155926.1 Populus trichocarpa TINY-like protein (TINYL7) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011048423.1 | 1e-171 | PREDICTED: ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q8LBQ7 | 9e-49 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A9PL76 | 1e-145 | A9PL76_POPTR; TINY-like protein | ||||
STRING | POPTR_0003s07700.1 | 1e-145 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16750.1 | 8e-49 | ERF family protein |
Publications ? help Back to Top | |||
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