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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023353.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GeBP | ||||||||
Protein Properties | Length: 413aa MW: 45980.8 Da PI: 4.3218 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 120.5 | 8.4e-38 | 129 | 226 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlw++eDei lLqG++d+++++g+ + ++d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k++sgk++ f+++hdq +fe+s+kiW CCG023353.1 129 LFQRLWTDEDEIELLQGFLDYTTTKGTvnNHHNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKINSGKDFCFKSPHDQATFEISRKIWS 226 79*************************977888****************************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.3E-35 | 130 | 226 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MAAEQDDTVF DQDLEVDDED EDDQSSQSQN DDLEDDLEIE NDDTLPENDD VLSEELLEDD 60 DTSTSAAVPT AIPAVTIASI PAVTTTTTTT AVASDSTPDV LKRQRVPPET TIIPSQDSKK 120 PQFDDTRRLF QRLWTDEDEI ELLQGFLDYT TTKGTVNNHH NDTALFYDQI KSKLQLDFNK 180 NQLVEKLRRL KKKYRNVLNK INSGKDFCFK SPHDQATFEI SRKIWSSTGK IAGFGNEDGH 240 NLDDDDGGNP NPNFNNHNVM MDADVAVKIE DQRSTPRSRK RSRSRPVVGV RTEEKRVLMN 300 DGFVGNETNV NGGGGGNGNL SSVIEETMRS CLSPLFKELL SNMAGAGMGG VGRGVGGLAM 360 NAMPLSFGVG DVMMMDEKWR KQHILELEVY SKRLELVQDQ IRAQLDELRS MGV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 279 | 284 | KRSRSR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011008272.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
Swissprot | F4K5T4 | 3e-93 | STKLU_ARATH; Probable transcription factor At5g28040 | ||||
TrEMBL | A0A2K2C3X3 | 0.0 | A0A2K2C3X3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_1258s00200.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 6e-76 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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