PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023325.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | SBP | ||||||||
Protein Properties | Length: 559aa MW: 61290.1 Da PI: 7.9944 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.2 | 3.5e-41 | 176 | 251 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv +C++dls+ keyh+rhkvCevhs++++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q CCG023325.1 176 CQVYDCNKDLSSSKEYHKRHKVCEVHSRTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQ 251 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.4E-32 | 170 | 237 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.958 | 173 | 250 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-38 | 174 | 253 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.0E-31 | 176 | 249 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MESGSYVLGG KGHVSNEPTS SSDTFSRSNN VLMSCDLKNQ CNFEYNFLAS GSPTIENGAR 60 GELGYQQLIE KHVPDTSIRN ALISEVSGRK NINPFVVVPN SFSLEDESTS GLSSTAMDSD 120 CRVSAFIDLN LGRFGDPRDV QNCRRIPKST SIVSPTKSSA PPRRHRAGMN SHTAFCQVYD 180 CNKDLSSSKE YHKRHKVCEV HSRTAKVIVN GIEQRFCQQC SRFHLLAEFD DGKRSCRKRL 240 AGHNERRRKP QVGLQSGRTG RLLHPYNGFS SSRFQGTALP TSFICQDILQ SGLSHPDKYG 300 ENDWWKRVKI EDGTGFSPPS AIPITNAYLH SKPLFPSNNS EKMFPTFHED GASTASRSIF 360 NGSTDRYLDV MGGRTSSSHS FLQDTSLGND EFAAFDAAST IQEFSGITAS GCARSLLSSQ 420 SQNSSSHSSG VPIAHQLLVS CRNTCYSMDQ IIGVSSQVSS SVVPNKFSSW VTSSVKGSHL 480 GPIPIPENSH GVNFDITDGV YHGFNAKDHL GSEDDTTIDL LQLSSQLQRV EHQKQSMQEK 540 QEMILSAAPA SLNKASKFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-29 | 175 | 249 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011006290.1 | 0.0 | PREDICTED: uncharacterized protein LOC105112316 | ||||
Refseq | XP_011006291.1 | 0.0 | PREDICTED: uncharacterized protein LOC105112316 | ||||
TrEMBL | A0A385JIN0 | 0.0 | A0A385JIN0_POPTO; Squamosa promoter-binding protein-like | ||||
TrEMBL | U5FPU6 | 0.0 | U5FPU6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s07140.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 7e-44 | SBP family protein |