PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023265.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 415aa MW: 46031.1 Da PI: 9.3917

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023265.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.9	3.6e-08	350	395	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k s a+ L + +e Ik+Lq CCG023265.1 350 SIAERVRRTRISERMRKLQELFPHM----DKQTSTADKLDLSIELIKDLQ 395 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.436	344	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-12	347	407	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.47E-7	348	399	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-10	349	406	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.4E-5	350	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.8E-5	350	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MSLLYSPSFS YSDGELRKSQ EFMDLNPYHY HHHQQQQQQF QQNSGLKSYR SAPSSFLESL 60 VNGTSGHSGG NGGVGNEDYR YLRSSSPEMD TMLKRPMSSC NGSGDFSSQN LQEFEERPTI 120 RQEQEDSEMV YRSLPGHNLV KGNSVSVGNS LDSAYSVMNS INVENSKQAT KMSARNGSNL 180 ARQNSSPAGI LSNHGVDKGF ALMINAASFR AGNGTNGEAT PSTSRLRSHV NFSSGHKTLP 240 QIAEIGEECI GGSSPEGDFS KRKYMYNFNS DTWGDASRLR DNDGNMFSGL NTRESQVGNS 300 GNRMTGLTHH LSLPKTVAEM ATGEKFLDFQ GNFVPCKIRA KRGFATHPRS IAERVRRTRI 360 SERMRKLQEL FPHMDKQTST ADKLDLSIEL IKDLQKQVKN LTDTKAKCTC SSKQK

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MSLLYSPSFS YSDGELRKSQ EFMDLNPYHY HHHQQQQQQF QQNSGLKSYR SAPSSFLESL  60
VNGTSGHSGG NGGVGNEDYR YLRSSSPEMD TMLKRPMSSC NGSGDFSSQN LQEFEERPTI  120
RQEQEDSEMV YRSLPGHNLV KGNSVSVGNS LDSAYSVMNS INVENSKQAT KMSARNGSNL  180
ARQNSSPAGI LSNHGVDKGF ALMINAASFR AGNGTNGEAT PSTSRLRSHV NFSSGHKTLP  240
QIAEIGEECI GGSSPEGDFS KRKYMYNFNS DTWGDASRLR DNDGNMFSGL NTRESQVGNS  300
GNRMTGLTHH LSLPKTVAEM ATGEKFLDFQ GNFVPCKIRA KRGFATHPRS IAERVRRTRI  360
SERMRKLQEL FPHMDKQTST ADKLDLSIEL IKDLQKQVKN LTDTKAKCTC SSKQK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011025049.1	0.0	PREDICTED: transcription factor bHLH130-like
Refseq	XP_011025050.1	0.0	PREDICTED: transcription factor bHLH130-like
Refseq	XP_011025051.1	0.0	PREDICTED: transcription factor bHLH130-like
Refseq	XP_011025052.1	0.0	PREDICTED: transcription factor bHLH130-like
TrEMBL	B9GFQ9	0.0	B9GFQ9_POPTR; Uncharacterized protein
STRING	POPTR_0001s27680.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-58	bHLH family protein