PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023206.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HB-other

Protein Properties

Length: 516aa MW: 57973 Da PI: 9.5522

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023206.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	39	93	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kRt t+ q+ +Le+++++++yp++e++ eLA+++gLte+q++ WF+ rR k+k+ CCG023206.1 39 KRTVKTPAQVIALESFYNEHKYPTEEMKSELADRIGLTEKQISSWFCHRRLKDKR 93 8****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-22	21	93	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.24E-17	22	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.779	34	94	IPR001356	Homeobox domain
SMART	SM00389	1.2E-18	36	98	IPR001356	Homeobox domain
CDD	cd00086	6.31E-17	39	95	No hit	No description
Pfam	PF00046	2.9E-16	39	93	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	69	92	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MIQKGSFNLG PAHALFPWFA ESSEVHSEEN RASPEKNLKR TVKTPAQVIA LESFYNEHKY 60 PTEEMKSELA DRIGLTEKQI SSWFCHRRLK DKRLKDEGYT NGRQDRSSSI LHDRGSGLRQ 120 DSCGSTKQGD YRNIDPREVE SRRLYGQDFH TADLTYDRTS RYTGNVSSID DISSGSSSSL 180 QDKFVSQRED PYDTETSKYL AQNGASMPLI PKGAESFGYK PSGFLKVKGE IENAAITAVK 240 MQLGRHYKED GPPLGVDFQS LPPSAFASPS RDPVNGPIYV GDLVRMRSPD VSGVRKQPSL 300 GGGYEVYSTK MSSHDSYTEG ANCNPEHGSD SHERKSRHHL EQKSTYNGSN SNAGGNSTMD 360 MPDDLAGETS VYRSKRNYRT SSKHDFEGRR SNSFATHHGP RGRREKTQGW LHDCDNDTPK 420 IARRNDYMSK RSHSILGPGK SLVTEERAPF TKTGKEEKLY GEMKRMKGSH DSVRVKRHPR 480 DETAVAKRFR AEFPQQEHVT KASVSGVRQR TNLTEG

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MIQKGSFNLG PAHALFPWFA ESSEVHSEEN RASPEKNLKR TVKTPAQVIA LESFYNEHKY  60
PTEEMKSELA DRIGLTEKQI SSWFCHRRLK DKRLKDEGYT NGRQDRSSSI LHDRGSGLRQ  120
DSCGSTKQGD YRNIDPREVE SRRLYGQDFH TADLTYDRTS RYTGNVSSID DISSGSSSSL  180
QDKFVSQRED PYDTETSKYL AQNGASMPLI PKGAESFGYK PSGFLKVKGE IENAAITAVK  240
MQLGRHYKED GPPLGVDFQS LPPSAFASPS RDPVNGPIYV GDLVRMRSPD VSGVRKQPSL  300
GGGYEVYSTK MSSHDSYTEG ANCNPEHGSD SHERKSRHHL EQKSTYNGSN SNAGGNSTMD  360
MPDDLAGETS VYRSKRNYRT SSKHDFEGRR SNSFATHHGP RGRREKTQGW LHDCDNDTPK  420
IARRNDYMSK RSHSILGPGK SLVTEERAPF TKTGKEEKLY GEMKRMKGSH DSVRVKRHPR  480
DETAVAKRFR AEFPQQEHVT KASVSGVRQR TNLTEG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011024955.1	0.0	PREDICTED: uncharacterized protein LOC105125967 isoform X1
TrEMBL	A0A2I4KKT9	0.0	A0A2I4KKT9_POPTR; HB-other family protein
STRING	POPTR_0001s28350.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	5e-91	HB-other family protein