PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023155.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | YABBY | ||||||||
Protein Properties | Length: 165aa MW: 18330 Da PI: 8.8543 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 210.3 | 6.6e-65 | 4 | 157 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 + se+vCyv+CnfCnt+lavsvPs+sl+++vtvrCGhC +llsvn+ + q+l+ ++ ++ +ll+ + + + s+s+ ++++ CCG023155.2 4 DVVSERVCYVHCNFCNTVLAVSVPSSSLLSIVTVRCGHCGNLLSVNMGGSLQTLPLQDL-QK---LHLLNSE--------DLSKDSGSSSKPNKVTA- 88 6789***************************************************9994.22...2222222........22222222222222222. PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++e pr+ p+ PekrqrvPsaynrfikeeiqrika+nPdishreafs+aaknWahfP+ihfgl CCG023155.2 89 FKPAEQEPPRMSPMRPAPEKRQRVPSAYNRFIKEEIQRIKACNPDISHREAFSTAAKNWAHFPHIHFGL 157 34567899999997777**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.2E-71 | 6 | 157 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.89E-8 | 98 | 150 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.2E-4 | 107 | 149 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MALDVVSERV CYVHCNFCNT VLAVSVPSSS LLSIVTVRCG HCGNLLSVNM GGSLQTLPLQ 60 DLQKLHLLNS EDLSKDSGSS SKPNKVTAFK PAEQEPPRMS PMRPAPEKRQ RVPSAYNRFI 120 KEEIQRIKAC NPDISHREAF STAAKNWAHF PHIHFGLKLD SDKHP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011024888.1 | 1e-121 | PREDICTED: putative axial regulator YABBY 2 isoform X1 | ||||
Swissprot | Q9XFB0 | 2e-70 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A2K2C1G2 | 3e-94 | A0A2K2C1G2_POPTR; Uncharacterized protein | ||||
STRING | EOY33226 | 1e-87 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 7e-56 | YABBY family protein |
Publications ? help Back to Top | |||
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