PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023065.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 372aa    MW: 41657.2 Da    PI: 5.8392
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023065.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.48.3e-30134195159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg++WrKYGqK + g+++pr+YYrCt++   gC ++k+v+rs+edp+++eitY+g+H+++
  CCG023065.1 134 LDDGFSWRKYGQKAILGAKYPRGYYRCTHRnvqGCLATKQVQRSDEDPTIFEITYRGRHTCT 195
                  59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.284129192IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-29131196IPR003657WRKY domain
SuperFamilySSF1182904.58E-26133196IPR003657WRKY domain
SMARTSM007746.1E-42134196IPR003657WRKY domain
PfamPF031064.2E-27135194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MANMGDWEQK NLVEELTLGM ELAKQLQIHL NVPSSSREAR EVLVQKILTS YEKALSMLNF  60
GTSLVGELHP VGGITIRNSE SPPSHSTGSP RSEDSDRDTR DQRQIDYGSS SRKSMPRWTK  120
QVRVNPGMGL EGPLDDGFSW RKYGQKAILG AKYPRGYYRC THRNVQGCLA TKQVQRSDED  180
PTIFEITYRG RHTCTQASNL LPLSQLRENQ GPSTNITIEP QQNQLHQENN PHTQELLLNF  240
RRGLKVMTED LDSHDQQSFP TNTFQFPSTS TVKPENNPLF PPAMVENSFM GNFSPPFISP  300
SDSVTNYYSV SPNEMQHSFG GNKNFQSSES ELTDIISAAV STTSSPTVGM DFPFGNVNFD  360
PNFTFDNSGF LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20134194868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774470.0GQ377447.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 27 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001918.10.0PREDICTED: probable WRKY transcription factor 30
TrEMBLB9I5400.0B9I540_POPTR; Uncharacterized protein
STRINGPOPTR_0012s01380.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.13e-61WRKY DNA-binding protein 30