PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023048.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 642aa    MW: 71069.4 Da    PI: 9.6977
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023048.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.49.3e-101447236
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                     ++W t+E++ll+ avk++G ++W+++a +++ ++t
      CCG023048.1 14 QSWGTWEELLLASAVKRHGFKNWDSVALELQ-TKT 47
                     68*****************************.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.2E-41269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-41247IPR009057Homeodomain-like
PfamPF002497.5E-91447IPR001005SANT/Myb domain
CDDcd001672.10E-51548No hitNo description
SMARTSM002971.3E-13133392IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.9E-12272394IPR001487Bromodomain
SuperFamilySSF473701.7E-14296396IPR001487Bromodomain
PfamPF004393.9E-8302373IPR001487Bromodomain
PROSITE profilePS5001411.229302373IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MANQEEDIHL QNQQSWGTWE ELLLASAVKR HGFKNWDSVA LELQTKTCLP HLLTTAQICQ  60
QKYLDLNRRF NTTTTNNLHH NHTPEEDIQD EEQNNISTDI INNNIVSVPW LEELRKLRVA  120
ELKQEVQRYD VSILTLQLKV KKLEEERERS VQEGDGNTEK PDLKPDRLRN EGEPGKPGSV  180
SGEESDREDR SVNESNSTAS GGGEEAVAKL EGVEPVQGGS GEPDPVVSGS NRKAMDEGGG  240
GGSGGDESCE YGDSVTQLSS ESLSSGRKRK GSERKEEVSV TGGEETVAVK SEPVVGFLEM  300
IRAHRNGSLF ESLLESQEMG VYKDMIRQHM DLEAIQTKLE QGSYSPSNLL FFRDLLLLFN  360
NALVFFPKHS VESLTAHKIR SLVMDEMRKD TQKSDSTVVP ENIPSQPKRE LERSDSLLAK  420
HKSTIPIIVC RKRSSISAKP SSSSLGQKIE QQQSNENNLV NDLKPPAVEQ GLLKMKSEEK  480
PVTGARSTRR GNKNLAKGST SPSKKQNTSP DTKVAAPDKS ETPKTEKKKN EALPLEKKKS  540
AVDFLKRIKK NSPAETPKNN NRGASSGGER KMEGSGGKGE RGKERVLKNS DKKQGKQESS  600
PSKKNVGRPS KKAAEESRVS GKRGRDSGGK EVAKRPRKRS RR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1633641KRPRKRSRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002320.10.0PREDICTED: muscle M-line assembly protein unc-89-like isoform X1
RefseqXP_011002321.10.0PREDICTED: muscle M-line assembly protein unc-89-like isoform X2
TrEMBLU5GV420.0U5GV42_POPTR; Uncharacterized protein
STRINGPOPTR_0001s23640.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-90DNA-binding bromodomain-containing protein