PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022851.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 440aa    MW: 49152.6 Da    PI: 6.8044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022851.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-19213263255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+t  eAaka+++a+ kl+g
  CCG022851.1 213 HYRGVRRRP-WGKYAAEIRDP---NrRGSRVWLGTFDTDLEAAKAYDRAAFKLRG 263
                  7********.**********9...4334**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-31212272IPR001471AP2/ERF domain
SMARTSM003804.6E-35213277IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-22213272IPR016177DNA-binding domain
CDDcd000182.05E-29213271No hitNo description
PfamPF008472.1E-14213263IPR001471AP2/ERF domain
PROSITE profilePS5103224.526213271IPR001471AP2/ERF domain
PRINTSPR003672.7E-13214225IPR001471AP2/ERF domain
PRINTSPR003672.7E-13253273IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
METDQTQQVT SALEFIKQHL LGDLLSPVAT SSASFYQFST NSETSTSLQC ETTSCSSSDF  60
STALPDFSGS LDLLEFTSVL SPAQENNTNI FEFEPKPEII DLFTPTPLNS TSHINFQSSS  120
SSSGSSGGSN FFEFESKPQI HQNFKFESKP QIVSQRGNSF FYEEPKPQVQ TARKRSLKIS  180
LPSKKPEWIQ FSSNPNPQTV EDNSGVAAQE VRHYRGVRRR PWGKYAAEIR DPNRRGSRVW  240
LGTFDTDLEA AKAYDRAAFK LRGSKAILNF PLEAGRCEEE SERKRSREGG VEEREVVKRV  300
MTVVKREEPE TEGDIPLTPS SWTAVWDGGD TKDVFNVPPL SPLSPHPPLG FPQLMKLNLE  360
AINNAGESRS YGARLVQGLR DTRDRDLLNG QRKRFSKMAS LGSTLPSHDK ESRLYNHHSS  420
PKAPGFSAVE LRYGHASIME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-27212272161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2209730.0JX220973.1 Populus x canadensis cultivar Nanling895 ERF5-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031940.10.0PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLJ7LCD40.0J7LCD4_POPCA; ERF5-1
STRINGPOPTR_0003s07850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.15e-47ethylene responsive element binding factor 6