PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022793.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 221aa    MW: 24840.2 Da    PI: 6.2589
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022793.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.27.8e-053180154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +r  ++erE+  R+++N+ f eL + l  +    ++ + Ka++L ++++ +k+L
  CCG022793.1 31 KRIHKSEREKLKREQLNELFLELASALELS----QPNNGKASMLCETTRLLKDL 80
                 68899**********************997....45677777777777777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.14E-52885No hitNo description
SuperFamilySSF474591.27E-102995IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.4263080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-63097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSMGSELNET VEDVTENRCL PAGENKGKVP KRIHKSEREK LKREQLNELF LELASALELS  60
QPNNGKASML CETTRLLKDL RTQIESLKKE NVALLSESHY VTVEKNELRE ESSALERQIG  120
KLHSELEMRA ASQSKPDLNV PPPEFLQPPH FPVDSFRLPA VDAVALQQTS TVFVVPISPD  180
HVQGFPMATS NVSKPHPRYP TAADSWPSQL LREQQIGRKE V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031843.11e-161PREDICTED: transcription factor bHLH47-like
SwissprotQ9SN741e-59BH047_ARATH; Transcription factor bHLH47
TrEMBLB9GY151e-157B9GY15_POPTR; Uncharacterized protein
STRINGPOPTR_0003s07200.11e-158(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82232531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.37e-49bHLH family protein
Publications ? help Back to Top
  1. Rodríguez-Celma J, et al.
    The transcriptional response of Arabidopsis leaves to Fe deficiency.
    Front Plant Sci, 2013. 4: p. 276
    [PMID:23888164]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Martínez-Trujillo M, et al.
    Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.
    Plant Mol. Biol., 2014. 86(1-2): p. 35-50
    [PMID:24928490]
  4. Li H,Wang L,Yang ZM
    Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency.
    Gene, 2015. 554(1): p. 16-24
    [PMID:25300251]
  5. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  6. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]