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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG022793.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 24840.2 Da PI: 6.2589 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.2 | 7.8e-05 | 31 | 80 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r ++erE+ R+++N+ f eL + l + ++ + Ka++L ++++ +k+L CCG022793.1 31 KRIHKSEREKLKREQLNELFLELASALELS----QPNNGKASMLCETTRLLKDL 80 68899**********************997....45677777777777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.14E-5 | 28 | 85 | No hit | No description |
SuperFamily | SSF47459 | 1.27E-10 | 29 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.426 | 30 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-6 | 30 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSMGSELNET VEDVTENRCL PAGENKGKVP KRIHKSEREK LKREQLNELF LELASALELS 60 QPNNGKASML CETTRLLKDL RTQIESLKKE NVALLSESHY VTVEKNELRE ESSALERQIG 120 KLHSELEMRA ASQSKPDLNV PPPEFLQPPH FPVDSFRLPA VDAVALQQTS TVFVVPISPD 180 HVQGFPMATS NVSKPHPRYP TAADSWPSQL LREQQIGRKE V |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011031843.1 | 1e-161 | PREDICTED: transcription factor bHLH47-like | ||||
Swissprot | Q9SN74 | 1e-59 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | B9GY15 | 1e-157 | B9GY15_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s07200.1 | 1e-158 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8223 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 7e-49 | bHLH family protein |