PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022722.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 274aa    MW: 30586.2 Da    PI: 5.9267
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022722.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.2e-192674355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  CCG022722.1 26 FLGVRRRP-WGRYAAEIRDPSS---KERHWLGTFDTAEEAALAYDRAARSMRG 74
                 56******.**********954...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.8E-342588IPR001471AP2/ERF domain
CDDcd000188.32E-312581No hitNo description
PROSITE profilePS5103220.7582582IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-212683IPR016177DNA-binding domain
PRINTSPR003673.4E-82637IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-292682IPR001471AP2/ERF domain
PfamPF008476.9E-122874IPR001471AP2/ERF domain
PRINTSPR003673.4E-84864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MNPSSSNRKK KQPQQVQQEP GTGLRFLGVR RRPWGRYAAE IRDPSSKERH WLGTFDTAEE  60
AALAYDRAAR SMRGSRARTN FVYSDMPAGS YVTSIISPDE QQSLQQQQHQ QHSDHNNNLS  120
SLFINVPPSH DHQPDSTPIF NQDFSSQCHL EEGFSSMTSG GGFWSCSSNN TYNQQLKHAI  180
QNNVLPHEFP SNISHSSDYN MSQCSWTDSS TSGLMGFEDQ TTMTSGFESV GSSSGSYFAF  240
DSGEYVHSPL FSRMPPVSDM VPDGFDLGSS AYFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-212681359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-212381362ATERF1
3gcc_A7e-212381362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001503.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLB9MUQ11e-180B9MUQ1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.18e-32ERF family protein