PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 306aa MW: 34161.2 Da PI: 9.78

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022528.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.9	2e-07	28	72	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E + + +a + + + +W+++a++++ g+t +++ + CCG022528.1 28 KWTPAENKAFENALAVYDEDtpdRWHKVAAMIP-GKTVGDVIKQYK 72 8******************************.**99988775 PP
2	Myb_DNA-binding	44.2	4.4e-14	135	179	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + Rt+ q+ s+ qky CCG022528.1 135 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVISRTPTQVASHAQKY 179 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-4	22	72	IPR009057	Homeodomain-like
PROSITE profile	PS51293	8.707	24	79	IPR017884	SANT domain
SMART	SM00717	1.2E-8	25	77	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.72E-10	27	76	IPR009057	Homeodomain-like
CDD	cd00167	1.63E-7	28	74	No hit	No description
Pfam	PF00249	4.8E-6	28	72	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.359	128	184	IPR017930	Myb domain
SuperFamily	SSF46689	1.27E-16	130	183	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-17	131	183	IPR006447	Myb domain, plants
SMART	SM00717	5.6E-13	132	182	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-12	132	179	IPR009057	Homeodomain-like
CDD	cd00167	3.23E-11	135	180	No hit	No description
Pfam	PF00249	2.4E-12	135	179	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MKWETGILSP ASYLSSTNWL LEESKNTKWT PAENKAFENA LAVYDEDTPD RWHKVAAMIP 60 GKTVGDVIKQ YKELELDVSY IEAGLIPIPG YSTSPFTLDW VDGNGYDGFK QSYGLGGKRS 120 STGRPADQER KKGVPWTEEE HKLFLMGLKK YGKGDWRNIS RNFVISRTPT QVASHAQKYF 180 IRQLSGGKDK RRASIHDITT VNLNDARTPS PDNKRPSPDQ PGAISQQPNS AAMPRTHFQW 240 NQPNGGGTLA FNSTNANIFM SAPYGISSYG LKMQGQNLHR GAVHDSYIRQ QAMGFQMPSG 300 HHYPHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	4e-18	29	94	11	76	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011035198.1	0.0	PREDICTED: transcription factor DIVARICATA
Refseq	XP_011035199.1	0.0	PREDICTED: transcription factor DIVARICATA
Swissprot	Q8S9H7	1e-147	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	B9GIV0	0.0	B9GIV0_POPTR; Uncharacterized protein
STRING	POPTR_0001s25590.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF466	34	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	1e-108	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]