PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022505.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 319aa    MW: 35783.2 Da    PI: 8.41
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022505.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv ++k +G g+W++ ++  g+ R++k+c++rw +yl
      CCG022505.1 14 KGAWTKEEDERLVSYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding57.72.7e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++
      CCG022505.1  67 RGNFSDEEDELIINLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.213961IPR017930Myb domain
SuperFamilySSF466895.75E-2913108IPR009057Homeodomain-like
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
PfamPF002492.5E-151461IPR001005SANT/Myb domain
CDDcd001672.04E-101661No hitNo description
PROSITE profilePS5129428.56562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-2865116IPR009057Homeodomain-like
SMARTSM007171.3E-1766114IPR001005SANT/Myb domain
PfamPF002491.4E-1667111IPR001005SANT/Myb domain
CDDcd001671.77E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLVSYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF SDEEDELIIN LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLFSRG  120
IDPLTHRPLK STTIITSSSS ITTSTTTNST NNKNSRLDTK RSTDFQLEQN YSFLQVQPEF  180
TMNNMTKTEN NSSIIKVGGS SDSAEDSNSS SGVTTELEVY PDHKLINLEL SIGLPCQSLV  240
SSINNLKQAK QQEQEEVVTH QLFETSTTPT SSAPVSVHKA ACLCYKLGFK NSQACSSCNA  300
MEKTVTADNL HRFYRPLDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141167108B-MYB
1h8a_C2e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007997.10.0PREDICTED: myb-related protein 308-like
SwissprotP813937e-89MYB08_ANTMA; Myb-related protein 308
TrEMBLB9N5A70.0B9N5A7_POPTR; Uncharacterized protein
STRINGPOPTR_0004s14510.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.19e-88myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]