PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022430.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 393aa    MW: 45047.1 Da    PI: 4.4801
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022430.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.87.5e-18221551128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiy...kvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                  lp G+rF+P deelv +yL +++++ k  +++++ i++++i+     ePw++  +  k + ++++fF++  kk ++  rk      g+W++  kd + 
  CCG022430.1  22 LPHGYRFRPDDEELVRFYLYPRITNPKlfTTIHTPIRDTHIFgdhAKEPWQIWeSFPKRHGEDLFFFTQLTKKGRNFVRKIS-CGPGTWHQEFKDPPF 118
                  699**********************99755555569999986222569****733445566789****99999887766666.578*********999 PP

          NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++   + ++  ++k++++   + ++ ++ +W+m ey+l
  CCG022430.1 119 NVSidpDCKVSVIRKVFTYQ--NPKSDQNGSWFMFEYSL 155
                  98887777789999999998..55555799*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-2019170IPR003441NAC domain
PROSITE profilePS5100524.31422170IPR003441NAC domain
PfamPF023652.7E-1423155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSLHSSRVPF VPQKPETLTP ELPHGYRFRP DDEELVRFYL YPRITNPKLF TTIHTPIRDT  60
HIFGDHAKEP WQIWESFPKR HGEDLFFFTQ LTKKGRNFVR KISCGPGTWH QEFKDPPFNV  120
SIDPDCKVSV IRKVFTYQNP KSDQNGSWFM FEYSLPSLSE QIVLCRLRKK EVHSIETVQT  180
TTTATTKKRK RDADSEIVDD ATKTIPQKPR INELDQRQQQ IMGFYVAVEN QQQHLELEPV  240
FDNWAEFDHS ECFSFENVQD LESYLMADDS DITSTSNVAP EPIIYAFNPT ENLQSIEVER  300
VENDGEAAST QDDDFCYKMI DFSGGYDEAD GVLASQATAE ASVCWVRATP DLDGTCTADA  360
VDYGLEHGVC DSSLTNWSGS FSQMLLEANY LPD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167189RKKEVHSIETVQTTTTATTKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999305.10.0PREDICTED: NAC transcription factor 29-like
TrEMBLA0A2K1XWX40.0A0A2K1XWX4_POPTR; Uncharacterized protein
STRINGPOPTR_0014s16160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13633523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-11NAC-domain protein 101