PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG022316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | DBB | ||||||||
Protein Properties | Length: 185aa MW: 20540.2 Da PI: 6.6923 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.4 | 1.1e-06 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC C ++ H CCG022316.1 4 LCDACESAAAIVFCAADEAALCLACDEKVH 33 6**************************998 PP | |||||||
2 | zf-B_box | 32.7 | 1.5e-10 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce++++ lC +C ++ H g H CCG022316.1 52 DVPRCDICENAPAFFYCETDGSSLCLQCDMNVHVGgkrtH 91 6799****************************96655556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.153 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.75E-6 | 3 | 45 | No hit | No description |
SMART | SM00336 | 1.8E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57845 | 2.98E-5 | 48 | 86 | No hit | No description |
SMART | SM00336 | 1.3E-12 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.143 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.6E-8 | 52 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.42E-8 | 54 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MRILCDACES AAAIVFCAAD EAALCLACDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE 60 NAPAFFYCET DGSSLCLQCD MNVHVGGKRT HGRYLLLRQR VEFPGDKPQP DELHSQPMHP 120 GETRKGQNNP PKATAEEKRQ NRQVSPAPMS LSNSDGHDKV DKKMIDLNMK PQRTDHEQAS 180 NNQEL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025917.1 | 1e-137 | PREDICTED: B-box zinc finger protein 18-like | ||||
Swissprot | C0SVM5 | 8e-75 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | B9HFI7 | 1e-133 | B9HFI7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s13830.1 | 1e-133 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2734 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 4e-66 | DBB family protein |