PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022273.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 363aa MW: 39933.5 Da PI: 8.5535

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022273.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.2	3.8e-05	263	300	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L++A+ YI+ L CCG022273.1 263 RKEKLGDRIAALQRLVAPY-----GKTDTASVLTEAIGYIQFL 300 7788899*******999.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.249	251	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.83E-5	261	305	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.2E-8	261	308	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.16E-11	261	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MMEPGNRHLQ HQFQEQLTGY YSSLLSQSAD YNKVSSNGDL NPGTGFILNI NSNTNNNYQT 60 DCIPNSRVSW PPASLTPGLS FGHASGFNQP FTANEFLLAK TKEELADPFF KPGENQWPLN 120 SSSSLHHISD SNAQKMASLQ NLSGCNRYNF SHILPSISIS TSDLCSSLVS SSLDLNLQAV 180 DLLSTSTYDG AASFSQSSEN TLDHFTRAHK DSPSKSCHKT STIEDGFGRK KRPSSNFQSK 240 NFLTEAKKNR STPRSLCPPL KVRKEKLGDR IAALQRLVAP YGKTDTASVL TEAIGYIQFL 300 HDQVQTLSVP YMKSSNIKPA RTTQVSSNEE DGKGQQKRDL RSRGLCLVPL SCVSFFNTCN 360 GDI

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MMEPGNRHLQ HQFQEQLTGY YSSLLSQSAD YNKVSSNGDL NPGTGFILNI NSNTNNNYQT  60
DCIPNSRVSW PPASLTPGLS FGHASGFNQP FTANEFLLAK TKEELADPFF KPGENQWPLN  120
SSSSLHHISD SNAQKMASLQ NLSGCNRYNF SHILPSISIS TSDLCSSLVS SSLDLNLQAV  180
DLLSTSTYDG AASFSQSSEN TLDHFTRAHK DSPSKSCHKT STIEDGFGRK KRPSSNFQSK  240
NFLTEAKKNR STPRSLCPPL KVRKEKLGDR IAALQRLVAP YGKTDTASVL TEAIGYIQFL  300
HDQVQTLSVP YMKSSNIKPA RTTQVSSNEE DGKGQQKRDL RSRGLCLVPL SCVSFFNTCN  360
GDI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011025855.1	0.0	PREDICTED: transcription factor bHLH110-like
TrEMBL	A0A3N7F942	0.0	A0A3N7F942_POPTR; Uncharacterized protein
STRING	POPTR_0007s13360.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-45	bHLH family protein